Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00175 ATGGCCATTGGTCCAAAGTTTTTCTTCCTTTTCTTTATGAAGTTAATACTTGTATCATCTCTCTCAAATATTGTGGAAGCGCAAAATTTGACAGTCAGATTTTACCAGGATAGCTGTCCTGGAGTGGAGTATACTGTTGCCAAAACGGGTTGTGATGGTTCTGTGCTGCTAAATTCTACAACAAACAACCAAGCTGAGAAAGATGCATTTCCCAACCTTAGTTTAAGAGGTTTCAATGTCATTGACGCTGTTAAAGTTGCCGTCGAAAAGCAATGTCCCGGTGTCGTTTCTTGTGCTGATATCCTCGCTTTAATAGCTCGTGACGCAGTTAGAATGGAAGAAGAGACGGAAGAGTATCGATCTCCAGAGAAGCGATCACACACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGCCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCTAAACTAGACAAATACTACGCCATCGCACTCAAGAACAAATGCAAGCCAAATGACCAGAAAACCATCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTTGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCTGATTCCGCTCTTCTCGACGATCCTGATACCAAAGCCTACATTCTGCTTCAGGCCAGTACACGTGGAGCTACTTTCGCGGCTGATTTCGCCGAATCCATGGTGAATATGGGGAATATCGGCGTCCTCACCGGCACTGACGGCGAAATTAGGCGGCGATATCGCGTGAGGAACACGTGCGGTCGTGATTTTATCTTTGGTTATCTCCTAATGCTTGTATCATCTTTTTCGAACATCGTTGGAGCAAAAAAATTGACGGTCGGATTTTATCAGGGTAGCTGCCCGGGGGTGGAGTATATTGTTGCCAAAACAGTAGCTCAATATATTAAGAAACAACCAACTCTTGCTGCTTCTTTGTTGAGAATACACTTCCATGACTGCTTTGTTAGGGGTTGTGATGGTTCTGTGCTATTAAATTCCAAGCCAAACAACCAAGCTGAGAAAGATTCTTTTCCCAACCTTAGTTTAAGAGGTTTTAATGTCGTTGACGCTGTTAAAGCTGCTGTCGAAAAGCAATGCCCCAGTATCGTTTCTTGTGCTGATATTCTCGCTTTGATAGCTCGCGACGCCGTTAGAATGATTGGAGGGCCGCTGTGGGAAGTTCCAACAGGAAGAAGAGATGGAAGAGTATCCATCTCCAGAGAAGTGTTGATCAATTTGCCGCCTCCCTTCGCTAATATCTCTTCTCTCAAAACAAGTTTCCTCTCCAAAGGTCTTTCTGTCAAAGATCTGGTTGTTTTATCCGGATCACACACAATCGGAGTCTCTCACTGCACCTCCTTCTCCAACCGTCTCTACAATTTCACCGGCAAAGGCGACGCCGATCCTAAACTAGACAAATACTACGTCGTTGCACTCAAGAACAAATGCAAGCCAAATGACCAGAAAACCATCGTCGAGATGGATCCTGGAAGCTTCAAGACCTTCGATCAAGGTTACTACACTCTCGTCTCCAAGAGAAGAGGATTGTTCCAGTCCGATTCTGCTCTTCTCGACGATCCTGATACCAAAGCTTACGTACTGCTTCAGGCAAGTACACGTGGCGCTAGTTTCGCCACCGATTTCGCTAAATCCATGGTGAATATGGGGAATATCGGTGTCCTCACCGGCACCGACGGTGAAATTAGGCGGCGATGTGCTTTTGTTAATTGA 1755 45.7 MAIGPKFFFLFFMKLILVSSLSNIVEAQNLTVRFYQDSCPGVEYTVAKTGCDGSVLLNSTTNNQAEKDAFPNLSLRGFNVIDAVKVAVEKQCPGVVSCADILALIARDAVRMEEETEEYRSPEKRSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYAIALKNKCKPNDQKTIVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYILLQASTRGATFAADFAESMVNMGNIGVLTGTDGEIRRRYRVRNTCGRDFIFGYLLMLVSSFSNIVGAKKLTVGFYQGSCPGVEYIVAKTVAQYIKKQPTLAASLLRIHFHDCFVRGCDGSVLLNSKPNNQAEKDSFPNLSLRGFNVVDAVKAAVEKQCPSIVSCADILALIARDAVRMIGGPLWEVPTGRRDGRVSISREVLINLPPPFANISSLKTSFLSKGLSVKDLVVLSGSHTIGVSHCTSFSNRLYNFTGKGDADPKLDKYYVVALKNKCKPNDQKTIVEMDPGSFKTFDQGYYTLVSKRRGLFQSDSALLDDPDTKAYVLLQASTRGASFATDFAKSMVNMGNIGVLTGTDGEIRRRCAFVN 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1795194 1806009 - ClCG02G001790.2 Cla02g00175 266301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00175 584 CDD secretory_peroxidase 29 257 IPR033905 GO:0004601|GO:0042744
Cla02g00175 584 Gene3D Peroxidase, domain 2 118 238 - -
Cla02g00175 584 SUPERFAMILY Heme-dependent peroxidases 30 259 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 ProSitePatterns Peroxidases active site signature. 317 328 IPR019794 GO:0004601
Cla02g00175 584 SUPERFAMILY Heme-dependent peroxidases 286 584 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 Gene3D - 289 584 - -
Cla02g00175 584 Gene3D Peroxidase, domain 2 422 563 - -
Cla02g00175 584 PANTHER PEROXIDASE 25-RELATED 126 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PANTHER PEROXIDASE 25-RELATED 49 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PANTHER PEROXIDASE 25-RELATED 268 583 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 ProSitePatterns Peroxidases proximal heme-ligand signature. 444 454 IPR019793 -
Cla02g00175 584 PRINTS Plant peroxidase signature 295 314 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 319 339 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 358 371 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 377 387 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 396 411 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 443 455 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 501 516 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 517 534 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Plant peroxidase signature 558 571 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Haem peroxidase superfamily signature 317 331 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Haem peroxidase superfamily signature 378 395 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Haem peroxidase superfamily signature 396 408 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Haem peroxidase superfamily signature 444 459 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PRINTS Haem peroxidase superfamily signature 503 518 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 PANTHER PEROXIDASE 126 255 - -
Cla02g00175 584 PANTHER PEROXIDASE 49 112 - -
Cla02g00175 584 PANTHER PEROXIDASE 268 583 - -
Cla02g00175 584 CDD secretory_peroxidase 285 583 IPR033905 GO:0004601|GO:0042744
Cla02g00175 584 Gene3D - 19 117 - -
Cla02g00175 584 Pfam Peroxidase 33 112 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 Pfam Peroxidase 302 544 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 Pfam Peroxidase 127 216 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 ProSiteProfiles Plant heme peroxidase family profile. 285 584 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00175 584 ProSiteProfiles Plant heme peroxidase family profile. 50 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00175 Cla-Chr2:1795194 Cla09g00439 Cla-Chr9:4162682 1.12E-39 dispersed
Cla03g00385 Cla-Chr3:4437906 Cla02g00175 Cla-Chr2:1795194 2.89E-33 dispersed
Cla05g00838 Cla-Chr5:8305976 Cla02g00175 Cla-Chr2:1795194 6.88E-42 dispersed
Cla08g01404 Cla-Chr8:26939999 Cla02g00175 Cla-Chr2:1795194 8.78E-40 dispersed
Cla09g01499 Cla-Chr9:29203688 Cla02g00175 Cla-Chr2:1795194 1.81E-39 dispersed
Cla09g01501 Cla-Chr9:29238210 Cla02g00175 Cla-Chr2:1795194 3.66E-35 dispersed
Cla02g00173 Cla-Chr2:1780905 Cla02g00175 Cla-Chr2:1795194 3.77E-47 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00175 K00430 - csv:101219177 553.518