Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00178 ATGAGCCGTCGGATCAACTACGAGATTTTATCTGCACCAGCAAATATCTTATTTGCTGGTTGGTTACCTGTGTTCTACCCCGGACAGCCAAGTTTCATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGGCAAAAGAATACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTCAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGACCAAGTTATGGATCATTGGACCTTTTTAATTAATGATGATGCATTTCCTGCTTTCTCATCCCGATTGCGACATCTAACACATCATTTTATCGAATATGGTCCTGTATCTGGTCGGTTGGATAGTCTCTGCCTGAATCGAATATATACTCTCAAAGAGAAGAGGGATCATCTCTTCTATTATGATATTCATAAGAAGTGTGGTTTTGAGGAGCTGAATTTAAGAGCCCATAATTTATTTGCTGGTTACCTGTGTTCTACTCCGGACAGCCAAATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCCGGAGCAAAAGAGTATGTTCATGTGCGTATACAGCAACGCAACGGGAGAAAAAGTCTGACAACTGTCCAAGGACTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAGAGAAAGAATGTATCTACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTCTAA 1023 42.72 MSRRINYEILSAPANILFAGWLPVFYPGQPSFMSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHDQVMDHWTFLINDDAFPAFSSRLRHLTHHFIEYGPVSGRLDSLCLNRIYTLKEKRDHLFYYDIHKKCGFEELNLRAHNLFAGYLCSTPDSQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1817252 1824060 + ClCG02G001820.1 Cla02g00178 266304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00178 340 Pfam Translation initiation factor SUI1 60 134 IPR001950 GO:0003743|GO:0006413
Cla02g00178 340 Pfam Translation initiation factor SUI1 255 329 IPR001950 GO:0003743|GO:0006413
Cla02g00178 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 231 340 - -
Cla02g00178 340 CDD eIF1_SUI1 61 143 IPR005874 GO:0003743
Cla02g00178 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 33 143 - -
Cla02g00178 340 ProSiteProfiles Translation initiation factor SUI1 family profile. 258 328 IPR001950 GO:0003743|GO:0006413
Cla02g00178 340 ProSiteProfiles Translation initiation factor SUI1 family profile. 63 133 IPR001950 GO:0003743|GO:0006413
Cla02g00178 340 SUPERFAMILY eIF1-like 30 144 IPR036877 GO:0003743|GO:0006413
Cla02g00178 340 Gene3D - 229 340 - -
Cla02g00178 340 Gene3D - 29 144 - -
Cla02g00178 340 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 38 143 IPR005874 GO:0003743
Cla02g00178 340 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 233 340 IPR005874 GO:0003743
Cla02g00178 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 231 340 - -
Cla02g00178 340 CDD eIF1_SUI1 256 339 IPR005874 GO:0003743
Cla02g00178 340 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 33 143 - -
Cla02g00178 340 SUPERFAMILY eIF1-like 232 340 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00178 Cla-Chr2:1817252 Cla09g01010 Cla-Chr9:10620803 1.06E-54 dispersed
Cla10g00503 Cla-Chr10:6673912 Cla02g00178 Cla-Chr2:1817252 2.56E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00178 K03113 - csv:101219651 223.787