Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00180 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGTCGTCGATGATCGGAAGGAACGGAAGTGTTGGGATGTTTGGGTCTCCAGGCAGCCTTGTTCTTGGTCAGGAAATACAAGGTGTGGAAATGGGAGAAAATGAATATGGGAGAATGAGAGAAACAGAAGAATTTGAGAGTGGAACAAAATCAAGTAGCGAGAACCACGAGGTTGGTTCCGGCGACGACCAACTCAACCAACGCCCCAAAAAGAAGCGTTACCACCGCCACACTCAGCATCAGATCCAACAAATGGAAGCGTTCTTCAAGGAATGTCCTCACCCAGATGACAAGCAAAGGAAGGAGCTGAGTAGGGAATTGAATTTAGAGCCATTGCAAGTGAAGTTTTGGTTTCAAAACAAGCGAACTCAGATGAAGACCCATCATGAGCGACATGAAAACACCCAGCTCCGAACAGAAAATGAGAAGCTTAGAGCAGATAATATGAGATATAGAGAAGCTCTTAGTAATGCCACGTGTCCCAATTGTGGAGGTCCGACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAATGCCCGCTTGAGAGAAGAGATCGATCGCATTTCAGCCATAGCAGCAAAATACGTTGGAAAGCCAGTATCAAACTACCCTCTTCTTTCTACTCCAATTCCTTCACGTCCTCTAGAACTTGGAATGGGAGGCTATGGAGGCCACGATTCCGGCGGGGACATGTACGGGGCAGCGGACCTTCTCCGGACCATAAGCGCCCCATCGGAAGCCGACAAGCCGATAATTATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTCCGAATGGCTCAGATGGGTGAGCCTTTGTGGATGACAGGGCTTGATGGCTCAACTGCTGTGCTTAATGAAGAGGAATATGTTAGAAGCTTTCCTAGAGGAATTGGTCCTAAGCCCTCTGGGTTCAGTTGTGAAGCTTCCCGTGCTACTGCTGTTGTCATTATGAATCATATTAGCCTCGTTGAGATGCTCATGGATGTGGATGTTTTGAGTTGGAAGACCTGTATCGTGAAACATGTTGGCTCTTTTAACACAAATTTGTGTACTTGTTCCATTTGTTTTTGGGTTTGTCAGAATCAATGGTCAACAATATTCAGTGGGATTGTGTCGAGAGCTATGACATTAGAAGTATTATCAACCGGCGTTGCTGGAAACTACAACGGAGCATTACAAGTGATGACATCCGAATTACAAGTGCCTTCACCCCTTGTTCCAACTCGGGAGAGCTATTTCGTGAGGTATTGTAAACAACATGGTGAGGGAACATGGGCTGTGGTGGACGTTTCCTTAGACAATTTACGCCCAGCTCCTGCCCTTAGATGTAGAAGAAGGCCATCCGGCTGCTTAATCCAAGAAATGCCCAATGGCTATTCTAAGGTTACCTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTTCACAGTTTATACAACCAGCTAGTTAGGTCCGGCCACGCGTTCGGCGCGAGGCGTTGGATTGCCACGTTGGATCGTCAGTGTGAACGGCTTGCCAGTGCCATGGCCACAAGTATTCCTACTGGTGATGCTGGAGTGATAACAAATCAAGAAGGAAGAAAAAGCATGTTGAAGCTGGCGGAGAGAATGGTGATGAGCTTTTGCGGTGGAGTGAGCGCGTCAACCACACACACTTGGACGACTCTATCGGGAACTGGAGCTGACGACGTTAGAGTTATGACAAGAAAGAGTGTTGACGATCCCGGCAGACCTCCCGGCATTGTCCTCAGCGCCGCCACTTCCTTTTGGCTTCCTCTTCCTCCCGACAGAGTCTTCCATTTTCTCAGAGATGAAAATTCTCGTAATGAGGTATGTAATATGTATTGGGATATTCTTTCAAATGGTGGAGTTGTTCAAGAAATGGCTCACATTGCCAATGGCCGCGACACGGGCAACTGTGTTTCTTTGCTACGAGTTAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAAAGCAGCACAGATCAAACAGCCTCGTTTGTAATCTACGCGCCGGTGGACATTGTGTCCATCAACGTCGTACTAAACGGCGGAGATCCTGATTACGTGGCCCTTCTCCCCTCCGGATTCGCCATTCTTCCCGATGGAACCACTGCGTCCAGCGGCGGCGCTGCCAATGGGGTGGCTGAACATGGGTCCGCCGGGTCGCTTTTAACGGTGGCGTTTCAGATTTTGGTTGACTCGGTTCCCACAGCAAAACTATCTCTTGGGTCAGTTGCAACGGTCAACAATCTCATTGCGTGTACGGTTGAAAGAATTAAAGCCTCTTTGTCATGTGATAATCCTTGA 2373 48.29 MPAGMMIPARNTASSMIGRNGSVGMFGSPGSLVLGQEIQGVEMGENEYGRMRETEEFESGTKSSSENHEVGSGDDQLNQRPKKKRYHRHTQHQIQQMEAFFKECPHPDDKQRKELSRELNLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALSNATCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVSNYPLLSTPIPSRPLELGMGGYGGHDSGGDMYGAADLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTGLDGSTAVLNEEEYVRSFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVDVLSWKTCIVKHVGSFNTNLCTCSICFWVCQNQWSTIFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPAPALRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGARRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPLPPDRVFHFLRDENSRNEVCNMYWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVIYAPVDIVSINVVLNGGDPDYVALLPSGFAILPDGTTASSGGAANGVAEHGSAGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCDNP 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1839253 1844978 - ClCG02G001840.2 Cla02g00180 266306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00180 790 CDD homeodomain 83 141 IPR001356 GO:0003677
Cla02g00180 790 Coils Coil 146 166 - -
Cla02g00180 790 SUPERFAMILY Homeodomain-like 67 139 IPR009057 -
Cla02g00180 790 SMART HOX_1 81 144 IPR001356 GO:0003677
Cla02g00180 790 Pfam START domain 272 353 IPR002913 GO:0008289
Cla02g00180 790 Pfam START domain 379 522 IPR002913 GO:0008289
Cla02g00180 790 MobiDBLite consensus disorder prediction 53 90 - -
Cla02g00180 790 ProSiteProfiles START domain profile. 262 525 IPR002913 GO:0008289
Cla02g00180 790 SUPERFAMILY Bet v1-like 541 782 - -
Cla02g00180 790 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Cla02g00180 790 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Cla02g00180 790 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Cla02g00180 790 SUPERFAMILY Bet v1-like 264 524 - -
Cla02g00180 790 CDD START_ArGLABRA2_like 266 521 - -
Cla02g00180 790 SMART START_1 271 522 IPR002913 GO:0008289
Cla02g00180 790 Gene3D - 387 517 IPR023393 -
Cla02g00180 790 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 378 787 - -
Cla02g00180 790 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 47 355 - -
Cla02g00180 790 Gene3D - 68 157 - -
Cla02g00180 790 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 378 787 IPR042160 -
Cla02g00180 790 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 47 355 IPR042160 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00180 Cla02g00833 CCT
Cla02g00180 Cla02g00833 ECH
Cla02g00833 Cla02g00180 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00180 Cla-Chr2:1839253 Cla05g00862 Cla-Chr5:8530092 0 dispersed
Cla05g01141 Cla-Chr5:12124146 Cla02g00180 Cla-Chr2:1839253 0 transposed
Cla01g02157 Cla-Chr1:35717070 Cla02g00180 Cla-Chr2:1839253 0 wgd
Cla02g00180 Cla-Chr2:1839253 Cla02g00833 Cla-Chr2:11320437 0 wgd
Cla02g00180 Cla-Chr2:1839253 Cla03g00460 Cla-Chr3:5175541 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60573 PF01852 START 8.00E-44 CL0209 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00180 K09338 - csv:101219415 1395.18