Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00183 ATGGTTAATTTTGTTGCTCTGCCGCTGTTGCTATATACTTTGATATGGCTGTTTCAGTTCACCGGTCCGATCTGCTGCCAAAAACCTTCTGTGGTAAACATTGGGGCGGTTTTTACTTTCAATTCCGTCATCGGCAGAGCAGCAAAGCCGGCCATGGAAGCAGCAATCTCCGACATAAACGCCGACCCCAATATCTTGAATGGCATAAAGCTTAACTTCCTCATGGAAGACTCTAATTGTAGTGGCTTCCTGGGCTCCGTTGAAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCATGATTGGCCCACAATCCTCAGTAGTGGCTCATGTGATTTCTCAAATTGTTAATGGTTTACAAATTCCTCAAGTATCCTATGCTGCTACTGATCCAACATTATCCACTCTGCAACTCCCTTTCTTCCTCCGAACCACTTTAAGTGACTCTTACCAAATGACTGCCATGGCTGACTTGATTGATTACTATGGCTGGAAAGAAGTCATTGCTATATTTTTGGATGATGATTATGGCAGAAATGGGATATCTTTTCTGGGAGATGAACTTCAGAAGAAAATGTGTCGTATTTCTCATGAATTCCCTTTGTCTTCTATGACTAATCTAACTAAGATCACACAAATACTTAACGATTCTAAATTGCTTGGTCCTCGTGTTTACGTAGTTCATGTAGGCCCTGATCCCCAATTAAGAATCTTCACCATTGCTCATAAACTTGGTATGCTTACAAGCAATTACGTTTGGTTCGCAACCGATTGGCTTTCTACAACTCTTGATTCTTCTTCACCAATAACCAATGGTGCTTCACTTGATATACTTAACGGAGTCGTGGGGTTGCGCCCTCATACTCCAGAGTCTAAACGAAAGAGGGATTTGTGGGATCGGTTGAGCAAAACGCAGCCAAAAGGTTTGACCAATTCTGTGTTGAATGTTTATGGACTGTATGCTTATGATTCAGTATGGGTTGTTGCGAAGGCAGTAGATAAGTTTCTCAAAGAAAATGGGAATATCATAACATTTTCATCCACAGGTAAAGTGTTTGGCTCTAATGGAAGTGGAATTCAATTGGGTAAGCTTAAAGTGTTTGATGGAGGAAGTGATTTACTTAGAATTATTAAGCAAACAGATTACAGAGGTTTAAGTGGGAGAATTCAGTTTGGTGAAGACAGAAATGTTGTAAATGGTAGCTATGATGTGATTAATATTAACCAAAGGGAAATTCGTTTGGTGGGTTATTGGTCTAATGACTCAAGATTTCATTCCCACTTAGATCAAAAACTTGAGAACGTGGTTTGGCCTGGTGGGAAGTCAGAAATACCAAGGGGTTGGGTCATTGCAGATGCTGGAAAGCCTCTGAGAATTGCTTTCCCAAAAAGAGCAAGCTTTGTTGATTTCGTAACTCAATTGAACAACTCCAATATAGTTCGAGGATACGTTATCGATATATTCAAAGAAGCTCTCAAGTTTGTTCCATATGAAGTTCCTTACAAATTTGTGCCTTTTGGGGATGGTAGAGTCAATCCAAGTTATGATGAACTTGTTCAGTCAGTTGCAAATAATGTGTTTGATGGAGCTGTTGGGGACATTGCTATTGTTACGAACCGAACAAAGATTGTCGATTTTTCCCAACCGTATACGACTACGGGGCTTATCATAGTTGCACCAGTTAAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGCAACAGCAGGTTCGTTTGTGGTAATTGGGATTGTTATTTGGATGTTAGAACATCGAATCAACGACCATTTTCGAGGTCCTCCGAAAAGGCAGATTGTCACTATGTGTTTATTCAGCTTTTCAACTCTATTCAAGGCAAATCAAGAAGCAACAATAAGCCCACTTTCTCGACTGGTGATGTTGGTATGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTCTTCTCCAATACGTGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTATGACTATCTCACACAAAGCCTTTTCATACCACGTTCCAGACTGGTGAAGCTGGACACCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGAGAAGAAGCAACAATAAGCCCACTTTCTCGACTGGTGATGTTGGTATGGCTGTTCTTATTATTGGTAATAACCTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGCAACTTTCTTCTCCAATACGTGGAATTGATGACTTGGTTGCAAGTAATTTGCCAATTGGATATCAAGTAGGATCCTTTGCTTATGACTATCTCACACAAAGCCTTTTCATACCACGTTCCAGACTGGTGAAGCTGGACACCCCTGAAGACTACGAGAAAGCACTGCGCCTTGGCCCAAAAGGAGGAGGTGCTTTCCAGCGAGGATCTCGACTTGCAGTTGATATGTCAACTGCAATTCTGAGACTCTCGGAGAGCGGGAAACTTCAAGAAATACACGACTTGTGGTTCTGTAAGCTAGGTTGTCCGGGGGATCGGGGAGGAAAGTCAGAGCCAGACCAACTTCAGTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTTGCTGCACTCTTCCTGTTTCTATTAAGACTAATTCACCAGTATATCCGTTATCAAAGACACCATCAGCGTCGTCGTTCAGAGGAAGTTACACCATTGCCTGTTCCATCGAACACCAGCTGTACTCAGACCATTCAAAACTTTATAGGGTTTATTGACGAGAAGGAAGAAGCCATCAAGAGCTTCTTCCTACATGGTGCTCAAAATGGGAACCAACTCCACAATCATTCCCAAAATGCCAAGGAGAAGGCCGATTCAGAGATACAGCTAGGGACCTCGAGTATGAATCGAGGATAA 2985 41.74 MVNFVALPLLLYTLIWLFQFTGPICCQKPSVVNIGAVFTFNSVIGRAAKPAMEAAISDINADPNILNGIKLNFLMEDSNCSGFLGSVEALQVLEKEIVAMIGPQSSVVAHVISQIVNGLQIPQVSYAATDPTLSTLQLPFFLRTTLSDSYQMTAMADLIDYYGWKEVIAIFLDDDYGRNGISFLGDELQKKMCRISHEFPLSSMTNLTKITQILNDSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTSNYVWFATDWLSTTLDSSSPITNGASLDILNGVVGLRPHTPESKRKRDLWDRLSKTQPKGLTNSVLNVYGLYAYDSVWVVAKAVDKFLKENGNIITFSSTGKVFGSNGSGIQLGKLKVFDGGSDLLRIIKQTDYRGLSGRIQFGEDRNVVNGSYDVININQREIRLVGYWSNDSRFHSHLDQKLENVVWPGGKSEIPRGWVIADAGKPLRIAFPKRASFVDFVTQLNNSNIVRGYVIDIFKEALKFVPYEVPYKFVPFGDGRVNPSYDELVQSVANNVFDGAVGDIAIVTNRTKIVDFSQPYTTTGLIIVAPVKDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIVTMCLFSFSTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLSSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLDTPEDYEKALRLGPKGGEEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQQLSSPIRGIDDLVASNLPIGYQVGSFAYDYLTQSLFIPRSRLVKLDTPEDYEKALRLGPKGGGAFQRGSRLAVDMSTAILRLSESGKLQEIHDLWFCKLGCPGDRGGKSEPDQLQLISFWGLYLLCGIISLAALFLFLLRLIHQYIRYQRHHQRRRSEEVTPLPVPSNTSCTQTIQNFIGFIDEKEEAIKSFFLHGAQNGNQLHNHSQNAKEKADSEIQLGTSSMNRG 994
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1867212 1875378 - ClCG02G001870.1 Cla02g00183 266309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00183 994 SUPERFAMILY Periplasmic binding protein-like II 435 724 - -
Cla02g00183 994 Pfam Receptor family ligand binding region 49 408 IPR001828 -
Cla02g00183 994 Gene3D - 459 567 - -
Cla02g00183 994 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 729 830 - -
Cla02g00183 994 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 831 967 - -
Cla02g00183 994 Pfam Bacterial extracellular solute-binding proteins, family 3 476 723 IPR001638 -
Cla02g00183 994 PIRSF IGluLR_plant 728 830 IPR017103 -
Cla02g00183 994 PIRSF IGluLR_plant 828 992 IPR017103 -
Cla02g00183 994 PIRSF IGluLR_plant 1 733 IPR017103 -
Cla02g00183 994 Gene3D - 51 399 - -
Cla02g00183 994 MobiDBLite consensus disorder prediction 969 994 - -
Cla02g00183 994 Pfam Ligand-gated ion channel 726 894 IPR001320 GO:0015276|GO:0016020
Cla02g00183 994 CDD PBP1_GABAb_receptor_plant 33 424 IPR044440 -
Cla02g00183 994 Gene3D - 568 695 - -
Cla02g00183 994 Gene3D - 696 800 - -
Cla02g00183 994 Gene3D - 147 422 - -
Cla02g00183 994 SUPERFAMILY Periplasmic binding protein-like II 752 862 - -
Cla02g00183 994 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 17 728 - -
Cla02g00183 994 PANTHER GLUTAMATE RECEPTOR 3.7 729 830 - -
Cla02g00183 994 PANTHER GLUTAMATE RECEPTOR 3.7 17 728 - -
Cla02g00183 994 MobiDBLite consensus disorder prediction 980 994 - -
Cla02g00183 994 SMART GluR_14 456 864 IPR001320 GO:0015276|GO:0016020
Cla02g00183 994 PANTHER GLUTAMATE RECEPTOR 3.7 831 967 - -
Cla02g00183 994 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Cla02g00183 994 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 236 259 - -
Cla02g00183 994 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Cla02g00183 994 SUPERFAMILY Periplasmic binding protein-like I 25 449 IPR028082 -
Cla02g00183 994 Pfam Ligand-gated ion channel 577 680 IPR001320 GO:0015276|GO:0016020
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00183 Cla02g00841 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00183 Cla-Chr2:1867212 Cla02g00842 Cla-Chr2:11583480 5.10E-95 dispersed
Cla02g00183 Cla-Chr2:1867212 Cla02g00838 Cla-Chr2:11431775 2.79E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00183 K05387 - csv:101203158 1285.4