Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00198 ATGGCCTGGACCCGACGATCCGCCGTCGGAAACGGCTCATCCGCCACCGTCTACCTCGCCTCCATCGCCTCCTCCGGCGAGCTATTCGCCGTCAAGTCCGCCGAGCTTCTCAAATCAGACTTCTTGAAAACAGAGCAGAGGATTCTTTCTTCCCTTTCCCACCCTTCAATTGTGGGCTACAGGGGATTCGATGTAACGACAGAAAATGGGAAGCTAATGTACAATCTCTTCATGGAGTACGTCGCCGGTGGCACTCTCACCGAAGAAATTGTCCGACGCGGCGGCAGGATTAAGGAGGCGGCGGCGGCGTTTTACACGCGTCAAATTGTTAGAGGTTTGGAGTACTTGCACAAACAGGGCTTGGTGCATTGTGATATCAAAGCTAAGAACATTTTAATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGTTGCTCCAAATGGGTTTCTGAGACGGAGGCGGTAATCAGCGGAACGCCGATGTTCATGGCACCGGAAGTGGCGCGTGGGGAAAAACAGGGGATTTCCTCTGATATATGGGCACTTGGGTGTACTTTAATCGAAATGGTCACCGGCGCTCCACCATGGCCCATCTCCGGCGACCCTGTTTCGGTGCTGTACCGGATCGGATATTCCGGCGAATCGCCGGCAATTCCGAGTTTTCTATCGGAGAAAGCGAAGGATTTTTTAAGGAAATGCTTGAGAAGGGACCCAACAGAAAGATGGAGCGCGAATCAACTTCTTGAACATCCATTTTTTGTGGAATTGAGTTCTGGGTCGGAGGAAATCAAGGAATTACATCCACATTCCGAATCTCCGACGAGTATTTTGGATCAAAGCCTCTGGAGTTTGTTAGAAGAAGAATCAGAAACTCTGTTGAAAACAGAGCAATGGGATGACGACGACGACGACGACAGAATCAAAGGGCTGGCGATGTTTTCAGGAGAAATTAAATGGGAATTGGGAGATGAGAATTGGATCACAATCAGAAGCTGTGTAGATAGTGAAGATGAAGAAGAATCCCGTTTTAGAAGAAATGATTTAGACTTAGTGGAACAGGAAAGAATAGGTAGTGGGAAAATCCAGTGTTTGGAATTGTTAGATAAAACAGTTAGCTTTAGAGTAAGGAAAAGTAATATTCTAATTAGTGAAATTAGTACCAACATTGGACAAATCTAA 1179 46.99 MAWTRRSAVGNGSSATVYLASIASSGELFAVKSAELLKSDFLKTEQRILSSLSHPSIVGYRGFDVTTENGKLMYNLFMEYVAGGTLTEEIVRRGGRIKEAAAAFYTRQIVRGLEYLHKQGLVHCDIKAKNILIGGDGLKIADFGCSKWVSETEAVISGTPMFMAPEVARGEKQGISSDIWALGCTLIEMVTGAPPWPISGDPVSVLYRIGYSGESPAIPSFLSEKAKDFLRKCLRRDPTERWSANQLLEHPFFVELSSGSEEIKELHPHSESPTSILDQSLWSLLEEESETLLKTEQWDDDDDDDRIKGLAMFSGEIKWELGDENWITIRSCVDSEDEEESRFRRNDLDLVEQERIGSGKIQCLELLDKTVSFRVRKSNILISEISTNIGQI 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2096574 2097752 - ClCG02G002020.1 Cla02g00198 266324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00198 392 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 15 1 347 - -
Cla02g00198 392 CDD STKc_MAPKKK 3 253 - -
Cla02g00198 392 SUPERFAMILY Protein kinase-like (PK-like) 6 292 IPR011009 -
Cla02g00198 392 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00198 392 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Cla02g00198 392 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cla02g00198 392 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00198 392 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00198 392 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 347 - -
Cla02g00198 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00198 Cla02g00871 CCT
Cla02g00871 Cla02g00198 ECH
Cla02g00198 Cla02g00871 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00198 Cla-Chr2:2096574 Cla03g00057 Cla-Chr3:605060 4.39E-65 dispersed
Cla09g01020 Cla-Chr9:10720401 Cla02g00198 Cla-Chr2:2096574 1.93E-99 transposed
Cla01g02127 Cla-Chr1:35533052 Cla02g00198 Cla-Chr2:2096574 6.44E-109 wgd
Cla02g00198 Cla-Chr2:2096574 Cla02g00871 Cla-Chr2:12323447 1.24E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80321 PF00069 Pkinase 1.30E-58 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00198 K20716 - csv:101205351 606.29