Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g00199 | ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCAACTATTCGCCTCCTCCTCCTCCTCCTCCCCCTCCGCCACCCCAAATTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGATTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGATGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATCATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCGACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGAGACCGGTCCCGGTCGCCAGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAGCAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACAGTCACATTGGACCTAACTCAAAACCCTAATCCTTTATTCCAACGCCCGGCTGCGGGTCACTTTCCTATCCCGTTTGCGGCCGGTCCGCCCCAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCTGCGGGTGTAGCAATTGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA | 1635 | 48.32 | MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPNYSPPPPPPPPPPPQIPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNNNHNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGDRSRSPGTTGEVASSKRHSPDQSSNWGSNNNNSNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ | 544 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2110886 | 2113877 | - | ClCG02G002030.2 | Cla02g00199 | 266325 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 216 | 298 | - | - | |
Cla02g00199 | 544 | SUPERFAMILY | WRKY DNA-binding domain | 297 | 365 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 1 | 57 | - | - | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 30 | 52 | - | - | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 521 | 544 | - | - | |
Cla02g00199 | 544 | Pfam | WRKY DNA -binding domain | 306 | 363 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 217 | 282 | - | - | |
Cla02g00199 | 544 | PANTHER | WRKY TRANSCRIPTION FACTOR 36-RELATED | 49 | 541 | IPR044810 | GO:0003700 | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 169 | 201 | - | - | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cla02g00199 | 544 | MobiDBLite | consensus disorder prediction | 181 | 201 | - | - | |
Cla02g00199 | 544 | Coils | Coil | 118 | 152 | - | - | |
Cla02g00199 | 544 | SMART | WRKY_cls | 304 | 364 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla02g00199 | 544 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 35 | 45 | - | - | |
Cla02g00199 | 544 | ProSiteProfiles | WRKY domain profile. | 299 | 365 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cla02g00199 | 544 | Gene3D | WRKY domain | 289 | 366 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cla02g00199 | 544 | PANTHER | OS05G0567200 PROTEIN | 49 | 541 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla01g01429 | Cla-Chr1:28775137 | Cla02g00199 | Cla-Chr2:2110886 | 3.83E-57 | dispersed | |
Cla02g00199 | Cla-Chr2:2110886 | Cla05g01057 | Cla-Chr5:10905271 | 5.90E-48 | dispersed | |
Cla01g02125 | Cla-Chr1:35508246 | Cla02g00199 | Cla-Chr2:2110886 | 2.20E-165 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
60575 | PF03106 | WRKY | 2.50E-24 | CL0274 | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g00199 | - | - | csv:101205587 | 793.497 |