Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00199 ATGGACGCCGCCGCACCTTCCCCTTCCCCTCCTCTGCCTACTCCCACTCCCCTGCAATTTCCGGTTAACCTCAATTCCACCCTCCCCGATCCCAACTATTCGCCTCCTCCTCCTCCTCCTCCCCCTCCGCCACCCCAAATTCCTCCACCCTCCTCCTCCCACCGCCCCTTCTTCGACGAAATGAACTTCTTCCCCGCCGATGATAAATCCCGCGTCCTTCTCTCTGCCTCTCACTCCAATCTCACTCCCACCAAACTCGACTTCAATGTTAACACGGGATTGAATCTCTTGACCACGAATTCGTGTAGCGATCAATCCATGGTGGATGATGGAGTTTCACCAAACCCAGAAGAAAAAAGAATAAAAAACGAGAGAGCAGTTCTTCAAGCTGAATTGGAGAGGATAAACTCGGAGAATCTACGATTAAAAGACATGTTAAATCAAGTGACGAGCAATTACCAAACACTGCAGATGCAATTCAACACGCTAATTCAAACCCAGAAAACAGGGGACGCCGGTGACCCGATTGAGGAAAACGCCGGCAGTGGCGGAGGGAATAATAATAATAATAATAATAATAATCATAATAATATTGGTAATAAGCTGGTGCCCAGGCAATTTATGGATCTTGGATTAGCGACCAATATGGAGAACGATGAGCCGTCAATGTCGTCGTCGGAAGGGAGGAGTGGAGACCGGTCCCGGTCGCCAGGAACCACCGGAGAAGTAGCGTCGTCGAAACGGCATAGCCCAGATCAATCTTCCAATTGGGGTTCCAATAATAACAACAGCAACAACAATAATAAAGTTCCAAAATTCAGTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCAGAAGCCCCCATGATAACAGATGGATGTCAATGGAGAAAATATGGACAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTATTACCGGTGCACCATGGCCGCCGGCTGCCCAGTTAGAAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTTTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCGCCGGCCGCCATGGCAATGGCTTCCACAACTTCATCGGCGGCCAGAATGCTTCTCTCAGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAATTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACGATCTCAGCCTCAGCCCCATTTCCCACAGTCACATTGGACCTAACTCAAAACCCTAATCCTTTATTCCAACGCCCGGCTGCGGGTCACTTTCCTATCCCGTTTGCGGCCGGTCCGCCCCAAAGCTTCCCACAGATCTTCGGACATGCATTATACAATCAATCAAAATTCTCAGGCCTTCAAATGTCAAAGGATATTGAAGCACCACCACCTCCACCACCGCAGAATCCATTGGCCGACACGTTGAGTGCTGCGGGTGTAGCAATTGCATCCGACCCGAATTTCATTGCGGCATTGGCAACGGCAATGACGTCGCTGATCGGCGGATCGCATCATCAGAATGAGAATGGTAATGGCAGTAGTAATGTTGATAACAATACAAATAGCAACTCCCAACAGTAA 1635 48.32 MDAAAPSPSPPLPTPTPLQFPVNLNSTLPDPNYSPPPPPPPPPPPQIPPPSSSHRPFFDEMNFFPADDKSRVLLSASHSNLTPTKLDFNVNTGLNLLTTNSCSDQSMVDDGVSPNPEEKRIKNERAVLQAELERINSENLRLKDMLNQVTSNYQTLQMQFNTLIQTQKTGDAGDPIEENAGSGGGNNNNNNNNNHNNIGNKLVPRQFMDLGLATNMENDEPSMSSSEGRSGDRSRSPGTTGEVASSKRHSPDQSSNWGSNNNNSNNNNKVPKFSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNPLFQRPAAGHFPIPFAAGPPQSFPQIFGHALYNQSKFSGLQMSKDIEAPPPPPPQNPLADTLSAAGVAIASDPNFIAALATAMTSLIGGSHHQNENGNGSSNVDNNTNSNSQQ 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2110886 2113877 - ClCG02G002030.2 Cla02g00199 266325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00199 544 MobiDBLite consensus disorder prediction 216 298 - -
Cla02g00199 544 SUPERFAMILY WRKY DNA-binding domain 297 365 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00199 544 MobiDBLite consensus disorder prediction 1 57 - -
Cla02g00199 544 MobiDBLite consensus disorder prediction 30 52 - -
Cla02g00199 544 MobiDBLite consensus disorder prediction 521 544 - -
Cla02g00199 544 Pfam WRKY DNA -binding domain 306 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00199 544 MobiDBLite consensus disorder prediction 217 282 - -
Cla02g00199 544 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 49 541 IPR044810 GO:0003700
Cla02g00199 544 MobiDBLite consensus disorder prediction 169 201 - -
Cla02g00199 544 MobiDBLite consensus disorder prediction 1 18 - -
Cla02g00199 544 MobiDBLite consensus disorder prediction 181 201 - -
Cla02g00199 544 Coils Coil 118 152 - -
Cla02g00199 544 SMART WRKY_cls 304 364 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00199 544 SUPERFAMILY Formin homology 2 domain (FH2 domain) 35 45 - -
Cla02g00199 544 ProSiteProfiles WRKY domain profile. 299 365 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00199 544 Gene3D WRKY domain 289 366 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00199 544 PANTHER OS05G0567200 PROTEIN 49 541 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01429 Cla-Chr1:28775137 Cla02g00199 Cla-Chr2:2110886 3.83E-57 dispersed
Cla02g00199 Cla-Chr2:2110886 Cla05g01057 Cla-Chr5:10905271 5.90E-48 dispersed
Cla01g02125 Cla-Chr1:35508246 Cla02g00199 Cla-Chr2:2110886 2.20E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60575 PF03106 WRKY 2.50E-24 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00199 - - csv:101205587 793.497