Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00217 ATGGAAGGAGGAGGATCCAGTGGAAGCAGCTGTTCATTCATGGCTACTTGTAACAGCACCAACAACAATAATACTAACACACCCATGATGATGATGATCAATAGTACTAATAATCCTCAAACGTTGGACAACAATAACAACAACAACAACAACAACAAGATGTTCTTGCCTTTGTCTTGGTCTTCTACTTCTTCCAACAATAATGCTCAAACTCAAAGGGTTTCTGCTTTTGTTCCTCAATCTAATACCAATAATAATGATCTTCTTACCACTTCCACTTCCAAAGCTAAAATTATGGCTCATCCTCTCTTCCCTCGCCTCCTCGCTGCCTACGTCAACTGCCAAAAGGTGGGTGCGCCGCCGGAAGTGGTGGCGAGGCTAGAGCAGGCGTGTGCCGTGGCGACGGGAAGCTGTAGGGCGGCGGGACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATATGAACAAGAGTTGACCAAACCTTTTAAAGAAGCAATGCTCTTCTTCTCAAGAATTGAGTCTCAGCTGAAAACCCTAGCAGTTTCTTCTGATGGTTTCGAGTTGGTTGGGCAAAACGAGTGCTCGAAGGAGATTGAGGTGGATATGAACGAAAACTACATAGACCCTCAAGCCGAAGAGAAGGAACTCAAAGGCCAACTTCTACGCAAATACAGCGGATATCTTGGGAGCCTAAAACAAGAGTTTTTGAAGAAGAAAAAGAATGGGAAGTTGCCAAAAGAAGCTAGACAACAATTGCTCGACTGGTGGAGTCGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGTTGGCGGAGTCGACGGGGCTAGACTTGAAGCAGATCAATAATTGGTTTATTAACCAAAGAAAGCGCCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACATTACTATTTGGACAATGTCATATGCAATCCTTTCTCTATGGATTGTTCTTCTACTCTTTTCTGA 1029 44.8 MEGGGSSGSSCSFMATCNSTNNNNTNTPMMMMINSTNNPQTLDNNNNNNNNNKMFLPLSWSSTSSNNNAQTQRVSAFVPQSNTNNNDLLTTSTSKAKIMAHPLFPRLLAAYVNCQKVGAPPEVVARLEQACAVATGSCRAAGRGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKTLAVSSDGFELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICNPFSMDCSSTLF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2237529 2241580 - ClCG02G002200.1 Cla02g00217 266343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00217 342 Gene3D - 249 311 - -
Cla02g00217 342 Pfam Homeobox KN domain 264 303 IPR008422 GO:0003677|GO:0006355
Cla02g00217 342 Pfam KNOX1 domain 95 132 IPR005540 GO:0003677|GO:0005634
Cla02g00217 342 ProSitePatterns 'Homeobox' domain signature. 282 305 IPR017970 GO:0000981|GO:0006355
Cla02g00217 342 PANTHER HOMEOBOX PROTEIN SBH1-LIKE ISOFORM X1 3 333 - -
Cla02g00217 342 SMART ELK_2 224 245 IPR005539 GO:0003677
Cla02g00217 342 CDD homeodomain 256 308 IPR001356 GO:0003677
Cla02g00217 342 ProSiteProfiles ELK domain profile. 224 244 IPR005539 GO:0003677
Cla02g00217 342 ProSiteProfiles 'Homeobox' domain profile. 244 307 IPR001356 GO:0003677
Cla02g00217 342 SMART KNOX2_2 139 190 IPR005541 GO:0003677|GO:0005634
Cla02g00217 342 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 333 - -
Cla02g00217 342 Pfam ELK domain 224 245 IPR005539 GO:0003677
Cla02g00217 342 SUPERFAMILY Homeodomain-like 246 321 IPR009057 -
Cla02g00217 342 SMART HOX_1 246 311 IPR001356 GO:0003677
Cla02g00217 342 MobiDBLite consensus disorder prediction 37 68 - -
Cla02g00217 342 Pfam KNOX2 domain 144 188 IPR005541 GO:0003677|GO:0005634
Cla02g00217 342 SMART KNOX1_2 92 136 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00217 Cla-Chr2:2237529 Cla05g01810 Cla-Chr5:30014939 1.28E-85 dispersed
Cla01g02117 Cla-Chr1:35437912 Cla02g00217 Cla-Chr2:2237529 5.68E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60578 PF03791 KNOX2 6.20E-22 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00217 - - csv:101205039 520.776