Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00218 ATGGCACAGTTGCCACCCAAAATCCCAAATATGACGCCTAATTGGCCCGACTTTTCCCGGCAGAAAATCCCTTCAATGGAAACCTTTGCACCGCCCACCACCACGCCGGCGGTTACTCAAAATAATCCTTCTTGGGTCGATGAATTTCTCGATTTTTCTTCTGCTAGACGTGGATCCCACCGTCGGTCTGTTAGTGATTCCATCACATTCCTCGAAATGCCAATGCTCGAGGAAGATTGCCGGACTGCCGCTGCTGCACCGCCCCCGCCGCCCCCGGGATCCGGTGACCGGAATGAATTTGATAGATTCGATGACGAGCAATTCCTGTCGATGTTTAACGATGAAATCTCCGCCGCCGTCGCTCCCACCTTGTCGTCGTCGAACCCCTCCACGCCGTCGGATCATAATAGTATTAACGACGAGAAAGACGCCCAAAACGACGGTAAGCAAAATCAGAACAAAAACGAATCCGACGAAGTACAGAGCCAACAGCAATCGGAAAACCAAACACAATCCAATTCCATGGCGACGGCGGCAACGGCGGCTTCCACTGATCGGATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCACAAAGATCACGAGTAAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTATCGGTGCTATCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTTAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCATTAAAAAGGGAGATAGAGAGACTAAGACAAGTATATCACCAACAAAACATTAAGAAGATGGAAAACAATGCAGCACCATCACCGGCGATTACTCCGTCCCGACCCGTCACCTCACCATCACCGGCGATTACTCCGTCCCGACCCGTCACCGCCATCGCCACAGATGCCAAACTTCCTAACATAGATCAAAACGAGCAAGTTCCGAACATCGTCGTTTAG 1035 49.95 MAQLPPKIPNMTPNWPDFSRQKIPSMETFAPPTTTPAVTQNNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRTAAAAPPPPPPGSGDRNEFDRFDDEQFLSMFNDEISAAVAPTLSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNESDEVQSQQQSENQTQSNSMATAATAASTDRITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKMENNAAPSPAITPSRPVTSPSPAITPSRPVTAIATDAKLPNIDQNEQVPNIVV 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2272540 2275857 - ClCG02G002210.1 Cla02g00218 266344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00218 344 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 303 - -
Cla02g00218 344 Coils Coil 270 290 - -
Cla02g00218 344 MobiDBLite consensus disorder prediction 293 320 - -
Cla02g00218 344 Gene3D - 190 262 - -
Cla02g00218 344 MobiDBLite consensus disorder prediction 155 184 - -
Cla02g00218 344 SMART brlzneu 187 251 IPR004827 GO:0003700|GO:0006355
Cla02g00218 344 MobiDBLite consensus disorder prediction 1 21 - -
Cla02g00218 344 PANTHER BASIC LEUCINE ZIPPER 34 1 303 - -
Cla02g00218 344 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 194 209 IPR004827 GO:0003700|GO:0006355
Cla02g00218 344 MobiDBLite consensus disorder prediction 122 193 - -
Cla02g00218 344 MobiDBLite consensus disorder prediction 79 101 - -
Cla02g00218 344 CDD bZIP_plant_RF2 192 242 IPR044759 GO:0003700|GO:0006355
Cla02g00218 344 Pfam bZIP transcription factor 191 235 IPR004827 GO:0003700|GO:0006355
Cla02g00218 344 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 189 241 IPR004827 GO:0003700|GO:0006355
Cla02g00218 344 SUPERFAMILY Leucine zipper domain 191 245 IPR046347 GO:0003700|GO:0006355
Cla02g00218 344 MobiDBLite consensus disorder prediction 136 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00218 Cla-Chr2:2272540 Cla11g01727 Cla-Chr11:30892573 3.51E-110 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60579 PF07716 bZIP_2 4.20E-09 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00218 - - csv:101205276 532.332