Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00228 ATGTCTGAAGAGCAAGCAATTTCAAATGCCTTCATTTGCAGCATCCCATCACTTGGATCCATCAACAACCCTTCTGTTGTCAAGAAGAAGAGGAATCTCCCTGGAAATCCAGGCAAGAAAACGCTTTATCCCGAAGCGGAAGTTGTGTCGTTGTCGCCTAAGACACTAATGGCGACGAACCGATTCTTGTGTGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAACTGCATAGGAGAGGGCACAATCTTCCATGGAAGCTAAAGCAAAGAAGCAATGGAAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTACATCACCATCCTTCAAGGGCTCTTGGAGATCTCACAGGAATTAAAAAGCACTTTTGCAGGAAGCATGGGGAGAAGAAGTGGAAGTGTGAGAAATGCTCAAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGTACCAAAGAGTATAAATGTGACTGTGGGACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATATTGTGTAGCATTAGCAGAAGAAACAGCAAGATTAAATGCAGCATCAACCATGGCCAACAACAGCAACAATTCAATGGCTGATAGTTACAACAACTACCATTTCCTAAAGCCCACAAACAACAATAATCCTCCACAATTCTTCCCTTCCTCCAACTTTTTCAAACCAGATGAAACTTCCCATATGTTCCTCAATAACATTAATAATGTTACTCCCACAATAGGACTCCCCTTTTGGATGGCTACAAATTCTCACCAAATCAATTTCCCTCACTCACTACTTCCTCAACAAACAACAACAACAACAACAACAAATTCTGATGTTCTTTCTGTTCCTTCCTTATACAGCAATGAAGAACAACAATCATCCCATCAATTTATGGCTTCATCAGCCAACATGTCAGCTACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTGACAACCTCCACAACAGACCCATCATTGATGGAAAGTTTTGGGTTGAAATTCAGTACAATAACTGATGGGAAAGCCTTGTTTTCAGGGCTTTATGGCTCAATAATGAACTCAAACTCCAACATTATTCCTAGTTGTTGTAGCCTTGAAAATGGTGGAGATCATCATCAGGACTCTGAAATATACTCTGCACCAGCAAAGAGAATGAGACACACTGTTAGTGAAGAGAGTGTTACTGGTGGAGAAGGAGAAACAAGGGATTTCTTGGGTGTGGGAATGCACTCCATATGCCATCCATCACCAGTAAATGGATGGATCTGA 1317 41.53 MSEEQAISNAFICSIPSLGSINNPSVVKKKRNLPGNPGKKTLYPEAEVVSLSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNGNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMANNSNNSMADSYNNYHFLKPTNNNNPPQFFPSSNFFKPDETSHMFLNNINNVTPTIGLPFWMATNSHQINFPHSLLPQQTTTTTTTNSDVLSVPSLYSNEEQQSSHQFMASSANMSATVLLQKAAQIGVTTSTTDPSLMESFGLKFSTITDGKALFSGLYGSIMNSNSNIIPSCCSLENGGDHHQDSEIYSAPAKRMRHTVSEESVTGGEGETRDFLGVGMHSICHPSPVNGWI 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2374002 2376927 + ClCG02G002310.1 Cla02g00228 266354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00228 438 SUPERFAMILY beta-beta-alpha zinc fingers 61 160 IPR036236 -
Cla02g00228 438 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Cla02g00228 438 Gene3D Classic Zinc Finger 58 85 - -
Cla02g00228 438 Pfam Zinc finger, C2H2 type 63 84 IPR013087 -
Cla02g00228 438 SMART c2h2final6 140 160 IPR013087 -
Cla02g00228 438 SMART c2h2final6 62 84 IPR013087 -
Cla02g00228 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Cla02g00228 438 PANTHER ZINC FINGER PROTEIN MAGPIE 24 430 - -
Cla02g00228 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 430 - -
Cla02g00228 438 Gene3D Classic Zinc Finger 118 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00228 Cla-Chr2:2374002 Cla02g01009 Cla-Chr2:18811623 1.86E-137 dispersed
Cla02g00228 Cla-Chr2:2374002 Cla07g01308 Cla-Chr7:30249706 2.01E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60580 PF00096 zf-C2H2 0.014 CL0361 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00228 K25870 - csv:101207997 641.343