Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00238 ATGATCTTTAGTTGTGGTCATCGAGATTACTCGTTTATAATCTGCGATAATGCCAAAGAACAAGGGAAAGGGGGAAAGAATAGGAAGAGAGGTAAGAATGAGGCAGATGACGAGAAGCGTGAGCTTGTGTTTAAGGAAGATGGGCAGGAATATGCTCAAGTGCTACGAATGCTAGGTAATGGTCGATGTGAAGCGATGTGTATCGATGGGATTAAACGTGTCTGCCATATTCGAGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATTATACTCGTTGGTCTTCATGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGTCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGTTACCCGAGAATACACGTCTTAATGAGGGTATCGTGGGGGGTATGGATGATGATGATGATGAAGGTGGTGGTGATGCTTATATTGAGTTTGAGGATGAAGACATTGATAAGATTTAG 489 41.92 MIFSCGHRDYSFIICDNAKEQGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGIKRVCHIRGKMHKKVWIAAGDIILVGLHDYQDDKADVILKYMSDEARLLKAYSELPENTRLNEGIVGGMDDDDDEGGGDAYIEFEDEDIDKI 162
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2438169 2439117 + ClCG02G002400.1 Cla02g00238 266364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00238 162 ProSitePatterns Eukaryotic initiation factor 1A signature. 57 79 IPR018104 GO:0003743|GO:0006413
Cla02g00238 162 PANTHER EIF-1A 19 162 IPR001253 GO:0003743|GO:0006413
Cla02g00238 162 TIGRFAM eIF-1A: translation initiation factor eIF-1A 30 126 IPR001253 GO:0003743|GO:0006413
Cla02g00238 162 CDD S1_IF1A 49 125 IPR001253 GO:0003743|GO:0006413
Cla02g00238 162 Hamap Translation initiation factor 1A [eif1a]. 32 126 IPR001253 GO:0003743|GO:0006413
Cla02g00238 162 Gene3D - 18 162 IPR012340 -
Cla02g00238 162 Pfam Translation initiation factor 1A / IF-1 48 109 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cla02g00238 162 SUPERFAMILY Nucleic acid-binding proteins 20 158 IPR012340 -
Cla02g00238 162 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A-LIKE 19 162 - -
Cla02g00238 162 SMART eIF1neu4 44 126 IPR001253 GO:0003743|GO:0006413
Cla02g00238 162 ProSiteProfiles S1 domain IF1 type profile. 38 112 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00238 Cla-Chr2:2438169 Cla07g01490 Cla-Chr7:32154329 2.11E-80 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00238 K03236 - csv:101207840 264.233