Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00274 ATGGGGTCTCTAGGGTTTGGAATAATTTACGAAGCAAATTTGAAGCTGTCACCGACTCATCGGCCAATGGTTTGCAACACAGCCTTCACTATAAAAATAAAATCAAATGGGAAGCGGAAGCTTGTGCGTTACCAAACAACGGCCATAGAATATGCTCTTAGCTGTTATCAACTTTGCCGGGAACTTCATCGGACGTCTCTCAGCCGGAGCACCATCACTGCTTCCTCAACTGTAACCATTTCAATTCCTTCTCTCTCTATCTTCTTCTTCCTAACGGCGGTCTCTTCTCTCTTTTCTTCTTCATCGGAGCTTCAATTTGACTTCAATTTCTTCGTCTTTTCACTGACTTCGCTCGTCTTTTCCAGCTTTGATTCGCCTGCTCGAATTCCGAATACGCACTTGGGAAAAAAGGTATGTGAATATTTTTCTCGTGTTTCTGAAATTGAAGTCGGAGTTTTGTTTCAGTATACAACTAGACGTGGCGTGGCATCCAGTTTCTGTGTCAATCAAAGGGACCAGTTAGAGAATGAAGTTGATTCTGATCAATTGGAGCATGAAAACAGTTCAGAAAGTCAACCGCAAACGTCTCAGGACGATCCTGGTGGAACTAATGCATCAAAATCAGATCACAAATGCACAGGGGCTGCCAGTATTACACTTGAAGAAGCTGTCAAGCAGCCTGAAGTTACAATCGAACAAGTGGATCGAGGAGAAATCTCTAATATAGTGACTGAGAAAGTGACCCATAAGCCAATTACTGCAGAGCAGAACTCCCATTCTGATTTGAAAGTATGTATTACCTCTACTATACGAGAGAAAGTATCAGAGGATGGGTATAACTGGCGGAAATATGGTCAGAAACTGGTTAAGGGAAATGTCTTTGTTAGAAGCTATTACAGATGTACGCATCCTACTTGCATGGTGAAAAAACAACTGGAGCGCACTCATGATGGGAAGATCACAGACACTGTTTACTTTGGCCAGCATGATCATCCTAAAGCTCAACCTCACATTCCAGTTGCTGTTGGAGTCGTTACCATGGTTGAAGAAAAATTAGATGAACATGCTTCTGGAAATTCTCAAGATAAGACCTCCATTGCGCCTGGCCAGACACCTCATCAAACTGAGCTAGCTGATATGCGTCAACCGTCGTCAGTTATGGCCAGTGATGATGTAAAAGATGAAGCTTCGAAAAGGTCTAGGATTAATGATGAGGTTGACAGTGATGATACACCAGACTTGAAACGAGAGAAGAAAAGATGTAATATTGACGTGACAGTAGCAGACAAGTCAACTGTTGAATCTCGGGTTGTTGTTCAAACTCCTAGCGAGGTTGACATCGTCAATGATGGATACCGCTGGCGGAAGTATGGACAGAAATTGGTGAAAGGCAATCCAAATCCTAGGAGTTACTACAGATGCTCAAGTCCTGGATGTCCAGTTAAGAAACATGTAGAGAGGGCGTCTTATGATCCAAAAGTGGTGCTTACCACGTATGAGGGTCAGCATGACCATGATATGCCTCCTACAAGGACGGTGACGTTGAATTCAGTTGGATCCACAGCAGCCCATAGTGATGAGACAAAACCAAAACCGGTCGGTTCTGAAGGCAAATTAATTGAAAAGAATGGCAAGTCGAATGCCACAGAAGCAAGTGATGGCATAGTCCTCGATATGGTGGTCAATCCTAGTCCGGGAGTTGCGAGTGGACAAAATAAGCAGCTCAAAGTAGCAATTGAAAGCTAA 1746 43.36 MGSLGFGIIYEANLKLSPTHRPMVCNTAFTIKIKSNGKRKLVRYQTTAIEYALSCYQLCRELHRTSLSRSTITASSTVTISIPSLSIFFFLTAVSSLFSSSSELQFDFNFFVFSLTSLVFSSFDSPARIPNTHLGKKVCEYFSRVSEIEVGVLFQYTTRRGVASSFCVNQRDQLENEVDSDQLEHENSSESQPQTSQDDPGGTNASKSDHKCTGAASITLEEAVKQPEVTIEQVDRGEISNIVTEKVTHKPITAEQNSHSDLKVCITSTIREKVSEDGYNWRKYGQKLVKGNVFVRSYYRCTHPTCMVKKQLERTHDGKITDTVYFGQHDHPKAQPHIPVAVGVVTMVEEKLDEHASGNSQDKTSIAPGQTPHQTELADMRQPSSVMASDDVKDEASKRSRINDEVDSDDTPDLKREKKRCNIDVTVADKSTVESRVVVQTPSEVDIVNDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASYDPKVVLTTYEGQHDHDMPPTRTVTLNSVGSTAAHSDETKPKPVGSEGKLIEKNGKSNATEASDGIVLDMVVNPSPGVASGQNKQLKVAIES 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2700132 2709824 + ClCG02G002690.2 Cla02g00274 266400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00274 581 MobiDBLite consensus disorder prediction 518 551 - -
Cla02g00274 581 SMART WRKY_cls 448 507 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 SMART WRKY_cls 275 333 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 MobiDBLite consensus disorder prediction 177 211 - -
Cla02g00274 581 ProSiteProfiles WRKY domain profile. 270 334 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 ProSiteProfiles WRKY domain profile. 443 508 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 SUPERFAMILY WRKY DNA-binding domain 270 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 MobiDBLite consensus disorder prediction 187 211 - -
Cla02g00274 581 Coils Coil 171 191 - -
Cla02g00274 581 PANTHER WRKY TRANSCRIPTION FACTOR 1 168 533 - -
Cla02g00274 581 MobiDBLite consensus disorder prediction 391 414 - -
Cla02g00274 581 Gene3D WRKY domain 260 334 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 SUPERFAMILY WRKY DNA-binding domain 440 508 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 Pfam WRKY DNA -binding domain 449 505 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 Pfam WRKY DNA -binding domain 276 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 Gene3D WRKY domain 435 501 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cla02g00274 581 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 168 533 IPR044810 GO:0003700
Cla02g00274 581 MobiDBLite consensus disorder prediction 353 414 - -
Cla02g00274 581 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00274 Cla-Chr2:2700132 Cla03g00015 Cla-Chr3:176047 3.24E-16 dispersed
Cla06g01236 Cla-Chr6:25608810 Cla02g00274 Cla-Chr2:2700132 1.05E-46 dispersed
Cla10g00433 Cla-Chr10:5809593 Cla02g00274 Cla-Chr2:2700132 9.51E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60582 PF03106 WRKY 1.60E-25 CL0274 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00274 K18834 - csv:101212482 730.324