Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00275 ATGTCTCAGAATTCTAAAGTCTCTTGTTCTAAGGTTAGATTACTAGGTGGTTTCAAGGTGAAGAGGGCTAAGGAGCATTTCCATGGCCAAGGGTGGAGTAACCTACTTTATATCTTGCCATTTGGTGTAATTTTGATTCTGGGTGTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAGTTCGGGAAGTGGAGATTCCAAATACGTGTAAAGAGAAGAGCTGGAACTTTCTGAAGCATTTCAATGTCAGTGAGAGTCAATTTCATGCTTTGGATTCGTTCTTCTTTCATTCAGATCAGACAGCATCTCTCCTCTGTGCTAAAGACTCAGAGCCTGGCAATGCACTGAAAGACTGCATTCCTTGTGCATTGAAGATTTTGGAACGGGAACAAGAATCGCAAAAGAAGCATGGGTGGCTTTCTGAAGATCTACAATCTGAAGGCCAGTGCCCAATTAGGGGTGAGATAGAGTCCTTCAATATTGGTCAATTGCAGTTAGTGGACAAGATACACTCACTTACTTCAAAATCTTCTTTTGCATTTGTGTCTCCCTGTCTTCAGATTCATAAAGAGAGGATCTTGCATACTAGGGAAATTGGAAATGGGCATTCTCGAAGTTTGAATGGATTAGTAATGGCATGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTGGTTTTCATTTGAAATTAAAGAACCACATACACAAGCCAATAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTACAGCAGGTGTTGCTACAGCAGCAGTTAGATCCATCTCCAAGTCCTCCAAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTGCTTGGAATTATTGGATCCTTTTGGCTCTTTTGGTATTTGAACAACAAAATCATCTTGAGGAGAGAAGAAACACTTTCTAACATGTGCGATGAGCGAGCTCGAATGTTACAGGATCAATTCAACGTTAGCATGAACCATGTTCATGCCTTGGCTATTCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGGCAATTAGTTATGTGGATGGGGGTGAAAGCAAGGGTACGATGGAAGAGAGAATGTTGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTGATCATTCAGACAGAAAGCGATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAGACCCTGGTTCAGGATTCTATTCCTGAGAATTTAGACCCTGCTCCCTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAAACTGTATCTCATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGCGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACCTAGGTGTTGTGCTCACTTTTGCTGTCTATAACGCTGGGCTTCCTCTTGATGCAACACCAGAGCAACGTATTGAAGCTACTGTTGGGTATCTAGGGGCATCCTATGATGTTCCATCACTGGTGGACAAGCTTCTGCACCAACTTTCTAGCAAACAATCAATTGTTGTTGATGTTTACGACACAACTAATGCATCTGCTCCCATTAAGATGTATGGATCTGATGTAATAGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCTCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAACCACAATTACCATGGATGGCTATAAATGCATCAGTGGGAGTTTTGGTTATTACTTTACTAGTTGGCCATATATTTTATGCGGCCATAAGTCGAATCGCAAAAGTGGAAAATGACTATGATGAGATGATGAAACTCAAAAGTCGCGCTGAAGCTGCAGATGTGGCAAAATCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTGTGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTTGACCAAGCTAAAATTGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTTGATAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGAATAGAGCAGTTGGCTGTTTATGTCTCTAATTTGGTCCCTGAAGTTCTCATCGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATCAAGAGTGCATGTCTGATTTTAGCTGGTAAAGCTAAAGGATACAGATGCTTCACCAAGGACAAAGGACACATATTTGTTACTGTACACCTGGCAGACGAGGTGAGGACTCCCCTCGAGGCAATGGACAGTGTGCTAAGACAAGGCCTACATTTAGTGAATGAGACGCCGAGAAAAAGTCACAATACATTAAGTGGGTTTCCAGTGGTCGAGAGGTGCAAGAGTTGGGAGTTTTTCGAGATATTTAGAAGAACAGATGTGATGAAAGAAAACGACGACGTAATTAAGTTGCTTGTATCAGTTGAGGATACGGGTCATGGAATTCCTTTAGATGCACAAAGTCGAATTTTTATGCCTTTTATGCAAGCAGATAGTTCCACTTCACGCAAGTATGGTGGGACCGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGTAGCACATTTTCATTCACTGGATGTTTGAGAAAAGGCGATACGAGGTCTCTTGATACAAAGTTGCAGCAGAATGATTCAGCCATGTTAGATTTCCGAGGACTGCGAGCGTTGGTACTGGATGATAGAAGCATTCGAGCTGAGGTAACAAAATATCATCTGAAGAGGTTAGGGATCTCAGTGGACATAGTTTCGAGTCTGGCTTCAGCACATGAATACTTAACTAATAATTGCATCAAAAGTCCATCCAAGCGTTTGGCCATGCTGCTTATTGACAAAGATGTATGGGATAAGGAAACCGATCCGACAAGCCCTCGCGTGTTTAAAGAACATGGGGTAAATGGGAAGGAAGAATGGAGAGGAAGTCCTAAGATCTTTCTCTTAGCCACCTCCATTAGCCCTCAAGAGACTAGAGCTCTCAAGTCGGCTGGTTATGTTGATAATGTAATGACAAAACCCCTTAGGTCAGGTGTCCTGATTGGATGTTTCCAGGAAGCTTTCGGGAAGGTCAACCGAAAGAAACCGTCTATTTTGGGGAACTTACTGAGAGAAAAGCAGATATTGGTGGTTGATGACAATGCAGTCAATAGACGAGTTGCCGAAGGTGCTCTAAAGAAATATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTGGCGCTGCTATTTCATTGTTAAAACCACCACACAAGTTCAATGCTTGCTTCATGGATCTTCAAATGCCTGAGATGGATGGGTTTGAAGCAACACGGCAGATACGAAATAACGAAAATAAGGTTAACGAGGACATTGCTTCTGGGAAAGCATCAATTGAGATGTTTGGGAATGTGGCTCATTGGCATACACCCGTGTTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAATTGTGGGATGGATGGTTATGTAGCAAAGCCTTTCGAAGAAGAAAAATTATATTCAGCAGTCGCTCGTTTCTTTGAGTCCGATGCTCGAGTAGAACATGAATAG 3825 42.54 MSQNSKVSCSKVRLLGGFKVKRAKEHFHGQGWSNLLYILPFGVILILGVWYIFSLCDGSSVREVEIPNTCKEKSWNFLKHFNVSESQFHALDSFFFHSDQTASLLCAKDSEPGNALKDCIPCALKILEREQESQKKHGWLSEDLQSEGQCPIRGEIESFNIGQLQLVDKIHSLTSKSSFAFVSPCLQIHKERILHTREIGNGHSRSLNGLVMACLWILAVVISCLKMSGFHLKLKNHIHKPIKHPSVENQPVIQLQQVLLQQQLDPSPSPPKGAGKWRKKLLIIFVLLGIIGSFWLFWYLNNKIILRREETLSNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQAISYVDGGESKGTMEERMLKTFSEYAERTAFERPLTSGVAYALKVDHSDRKRFEEEHGWTIKKMGTEDQTLVQDSIPENLDPAPFQDEYAPVIFSQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNAGLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAISRIAKVENDYDEMMKLKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDCAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIEQLAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKSACLILAGKAKGYRCFTKDKGHIFVTVHLADEVRTPLEAMDSVLRQGLHLVNETPRKSHNTLSGFPVVERCKSWEFFEIFRRTDVMKENDDVIKLLVSVEDTGHGIPLDAQSRIFMPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTGCLRKGDTRSLDTKLQQNDSAMLDFRGLRALVLDDRSIRAEVTKYHLKRLGISVDIVSSLASAHEYLTNNCIKSPSKRLAMLLIDKDVWDKETDPTSPRVFKEHGVNGKEEWRGSPKIFLLATSISPQETRALKSAGYVDNVMTKPLRSGVLIGCFQEAFGKVNRKKPSILGNLLREKQILVVDDNAVNRRVAEGALKKYGAKVTCVESGGAAISLLKPPHKFNACFMDLQMPEMDGFEATRQIRNNENKVNEDIASGKASIEMFGNVAHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARFFESDARVEHE 1274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2706911 2721182 - ClCG02G002700.1 Cla02g00275 266401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00275 1274 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 639 719 IPR036097 GO:0000155|GO:0007165
Cla02g00275 1274 SMART HKATPase_4 766 954 IPR003594 -
Cla02g00275 1274 CDD REC_hyHK_CKI1_RcsC-like 1129 1261 - -
Cla02g00275 1274 Gene3D - 717 954 IPR036890 -
Cla02g00275 1274 CDD HATPase_EvgS-ArcB-TorS-like 771 952 - -
Cla02g00275 1274 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 766 949 IPR003594 -
Cla02g00275 1274 SUPERFAMILY CheY-like 1125 1265 IPR011006 -
Cla02g00275 1274 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 707 949 IPR036890 -
Cla02g00275 1274 SUPERFAMILY CheY-like 973 1109 IPR011006 -
Cla02g00275 1274 ProSiteProfiles CHASE domain profile. 368 592 IPR006189 -
Cla02g00275 1274 SMART REC_2 1127 1261 IPR001789 GO:0000160
Cla02g00275 1274 PANTHER TWO-COMPONENT HISTIDINE KINASE 268 1267 - -
Cla02g00275 1274 CDD HisKA 653 714 IPR003661 GO:0000155|GO:0007165
Cla02g00275 1274 Gene3D - 625 716 - -
Cla02g00275 1274 Gene3D - 300 352 - -
Cla02g00275 1274 PANTHER HISTIDINE KINASE 2 268 1267 - -
Cla02g00275 1274 PRINTS Bacterial sensor protein C-terminal signature 938 951 IPR004358 GO:0016310|GO:0016772
Cla02g00275 1274 PRINTS Bacterial sensor protein C-terminal signature 914 932 IPR004358 GO:0016310|GO:0016772
Cla02g00275 1274 PRINTS Bacterial sensor protein C-terminal signature 897 907 IPR004358 GO:0016310|GO:0016772
Cla02g00275 1274 PRINTS Bacterial sensor protein C-terminal signature 879 893 IPR004358 GO:0016310|GO:0016772
Cla02g00275 1274 ProSiteProfiles Response regulatory domain profile. 1128 1265 IPR001789 GO:0000160
Cla02g00275 1274 Pfam CHASE domain 375 565 IPR006189 -
Cla02g00275 1274 Pfam Response regulator receiver domain 1129 1261 IPR001789 GO:0000160
Cla02g00275 1274 Coils Coil 630 650 - -
Cla02g00275 1274 SMART CHASE_2 369 567 IPR006189 -
Cla02g00275 1274 ProSiteProfiles Histidine kinase domain profile. 660 954 IPR005467 -
Cla02g00275 1274 Gene3D - 1122 1271 - -
Cla02g00275 1274 Gene3D CHASE domain 374 599 IPR042240 -
Cla02g00275 1274 Pfam His Kinase A (phospho-acceptor) domain 653 718 IPR003661 GO:0000155|GO:0007165
Cla02g00275 1274 SMART HisKA_10 653 718 IPR003661 GO:0000155|GO:0007165
Cla02g00275 1274 ProSiteProfiles Response regulatory domain profile. 978 1109 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00275 Cla-Chr2:2706911 Cla11g01088 Cla-Chr11:22045980 6.46E-10 dispersed
Cla01g00654 Cla-Chr1:7622763 Cla02g00275 Cla-Chr2:2706911 0 transposed
Cla02g01475 Cla-Chr2:29282105 Cla02g00275 Cla-Chr2:2706911 7.45E-12 transposed
Cla05g01652 Cla-Chr5:28058634 Cla02g00275 Cla-Chr2:2706911 4.00E-52 transposed
Cla06g00204 Cla-Chr6:2419644 Cla02g00275 Cla-Chr2:2706911 0 transposed
Cla10g00064 Cla-Chr10:684620 Cla02g00275 Cla-Chr2:2706911 3.01E-12 transposed
Cla11g00097 Cla-Chr11:1275702 Cla02g00275 Cla-Chr2:2706911 0 transposed
Cla02g00275 Cla-Chr2:2706911 Cla02g00917 Cla-Chr2:14012294 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60583 PF03924 CHASE 1.40E-33 CL0165 Cla TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00275 K14489 - jre:109012626 1533.47