Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00291 ATGTATCCTTTGAGAAGGGCGCTCGAGTTTCTAGAAGTGTCTTGGTTGGTTGATTCTTCGAGGGAGTGGACTGAGGAGAGTAGTCGAACTGTGAAGAAGATGTGGAAGAATTGCTCTGAGTCGTGCTTCAGAGATCATGAAAATCTGGAAAGGATTTCACTGTCTAGTTCTCGGTTGGTAGCTTCTTTCTGGGTTGGTGAATTTGAAAAAACAAGAAATTGGAAACGAAGTAGAAAGATGTCTTCAACGTCAACAAATAAGACTGTGTGTTCTAAGACCAGCTGCGACCGATCAAAACACGCGGCTCATGTTGTTGCACAAACCCCAATTGATGCAAAGCTTCATGTTGACTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCGTCAGTTGATATCAACGCCGCATGTTCCACTAGCCATGTTCATGCATCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTCCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACACTTTTTCGTTTCCCAGGAGCTGCAGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTTGTCCACTGTAAAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTTAATCCGGCTGATGTGCCAGTGACAGCAGCTGGGGCATTGAAATCGTATAAGCTAGCCGCCAAAGCCATATCAAAATTGCAGTCCTTGCCTAGTGGGAATATATCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTTGTAGCTGAATGCTGTCGGTCGGACTTAGAACCATATCTTGGTTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTTCTTTTCTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAAACAGGAGATTGACTCAGGCATTAAGTCTATGTGGGTCAGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGATTTGTTCCATTTCCTTTGCGATATGCTTGCGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCAGTAGGAATTGTTACTCAATCTCCCAATATTATGGATCTTGTTAAATGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGCTACTTGGAGTCACCCCAACAGAGGCACAAATTAGAAATATAGCTGAATGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCACTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGTGACGAGGATGATGGAAGAAAGATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGAGAATGAAGAAGAATGCAAGGTGATTACAAACATCCCACTCCCACCATTTGATGAGAAGACACAACAGTTGGATGAATTGCGTGTCATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAACGGTTGGAACTCCAAAGCCACTGAGCTTACAGGATTGCCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTAGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTTAAAACATTTGGAATTCCAGGGCAAAATGGTCCGGTGATCTTAGAAGTTAACTCGTGTTGTAGCCGAGACCTAAACAATAATGTCGTAGGAATTTCTTTTATAGGGCAGGATGTTACGAAGCAAAAACTGGTTATGAACCAATACACCCAAATCCAAGGTGATTACATGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACTGATAGCGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGATAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGCTGCCGTGTGAAAGATCACACATTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATGCAGAGAAATCTTTGTTTAGGTTCTGTGATCGTGAAGGAAATTATGTTGAAACGTTGCTCACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATTTCAGAACAAGCTACAGCTGAAAATCTCCACAAATTGGCATATCTACGTCAAGAAATTAAAAAACCCCTTGATGGGATTGCATTTATACAGAATCTAATGGGTTCATCTGACTTAAGCAAAGAGCAAATGTGGCTACTTAAATTGAACACTTCGAGTCGGGAACAATTTTACATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATGTTCTTGACGTTGTAATGAATCAAAACATGATTTTGAGTCAAGAGCGTGGGGTGAAGATCATTTGTGAACCACCTACTGACGTGTCATCACTGCACTTATATGGAGATAACATGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCAGTTGCAAAGAATCATCAGTTGTCTTTAAAGCAACTCCAAGGAAGGAACGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGAATCACCCATCCCGCCCCGGGAATTCCTGTACACTTAATTCGGGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTTCTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATATTGCTAGATGA 3558 41.85 MYPLRRALEFLEVSWLVDSSREWTEESSRTVKKMWKNCSESCFRDHENLERISLSSSRLVASFWVGEFEKTRNWKRSRKMSSTSTNKTVCSKTSCDRSKHAAHVVAQTPIDAKLHVDFEGSERFFDYSASVDINAACSTSHVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRFPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQNRRLTQALSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIAEWLLKDHSGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDENEEECKVITNIPLPPFDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLPIQQAIGMPLVDCLVNDSVKVVKKMLSLAIQGIEEKNIEIKLKTFGIPGQNGPVILEVNSCCSRDLNNNVVGISFIGQDVTKQKLVMNQYTQIQGDYMGIMRNPSALIPPIFMTDSDGRCLEWNDAMEKLSGFRRIEMTNRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDAEKSLFRFCDREGNYVETLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIKKPLDGIAFIQNLMGSSDLSKEQMWLLKLNTSSREQFYMETNCSEFNLGDVLDVVMNQNMILSQERGVKIICEPPTDVSSLHLYGDNMRLQQVLSEFLTNTLLFSCKESSVVFKATPRKERIGKGIHIVHLELRITHPAPGIPVHLIREMFDDNNDSSKEGLGLYISQKLLKIMNGTVQYLREAETSSFIILIEFPLVEHIAR 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2825204 2830953 - ClCG02G002860.2 Cla02g00291 266417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00291 1185 CDD PAS 705 811 IPR000014 -
Cla02g00291 1185 SUPERFAMILY GAF domain-like 278 474 - -
Cla02g00291 1185 SMART gaf_1 298 487 IPR003018 GO:0005515
Cla02g00291 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 841 945 IPR035965 -
Cla02g00291 1185 Gene3D PAS domain 682 825 - -
Cla02g00291 1185 SUPERFAMILY GAF domain-like 485 665 - -
Cla02g00291 1185 SMART HKATPase_4 1067 1181 IPR003594 -
Cla02g00291 1185 ProSiteProfiles PAS repeat profile. 836 879 IPR000014 -
Cla02g00291 1185 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 298 467 IPR016132 -
Cla02g00291 1185 Pfam PAS fold 150 265 IPR013654 GO:0006355
Cla02g00291 1185 Pfam GAF domain 299 477 IPR003018 GO:0005515
Cla02g00291 1185 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1067 1173 IPR003594 -
Cla02g00291 1185 Gene3D - 482 655 IPR043150 -
Cla02g00291 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 154 267 IPR035965 -
Cla02g00291 1185 PANTHER PHYTOCHROME C 80 1181 - -
Cla02g00291 1185 CDD HATPase_Phy-like 1066 1177 IPR044767 -
Cla02g00291 1185 PRINTS Phytochrome signature 716 731 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 809 829 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 697 713 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 213 235 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 625 643 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 313 332 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 398 419 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 507 527 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 592 611 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 789 806 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1024 1175 IPR036890 -
Cla02g00291 1185 SMART pas_2 696 762 IPR000014 -
Cla02g00291 1185 SMART pas_2 826 896 IPR000014 -
Cla02g00291 1185 Pfam PAS fold 697 811 IPR013767 GO:0006355
Cla02g00291 1185 Pfam PAS fold 837 948 IPR013767 GO:0006355
Cla02g00291 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 703 814 IPR035965 -
Cla02g00291 1185 ProSiteProfiles Histidine kinase domain profile. 977 1181 IPR005467 -
Cla02g00291 1185 Gene3D PAS domain 840 951 - -
Cla02g00291 1185 TIGRFAM sensory_box: PAS domain S-box protein 701 815 IPR000014 -
Cla02g00291 1185 TIGRFAM sensory_box: PAS domain S-box protein 841 947 IPR000014 -
Cla02g00291 1185 CDD PAS 838 948 IPR000014 -
Cla02g00291 1185 Gene3D - 279 638 IPR029016 -
Cla02g00291 1185 Pfam Phytochrome region 490 665 IPR013515 GO:0006355|GO:0009584
Cla02g00291 1185 ProSitePatterns Phytochrome chromophore attachment site signature. 398 407 IPR013516 -
Cla02g00291 1185 ProSiteProfiles PAS repeat profile. 694 764 IPR000014 -
Cla02g00291 1185 Gene3D PAS domain 153 401 - -
Cla02g00291 1185 PIRSF Phytochrome_conventional 81 1185 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cla02g00291 1185 Gene3D - 1005 1173 IPR036890 -
Cla02g00291 1185 PANTHER TWO-COMPONENT HISTIDINE KINASE 80 1181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00291 Cla-Chr2:2825204 Cla08g00910 Cla-Chr8:21593105 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00291 - - csv:101211915 2043.47