Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00291 ATGTATCCTTTGAGAAGGGCGCTCGAGTTTCTAGAAGTGTCTTGGTTGGTTGATTCTTCGAGGGAGTGGACTGAGGAGAGTAGTCGAACTGTGAAGAAGATGTGGAAGAATTGCTCTGAGTCGTGCTTCAGAGATCATGAAAATCTGGAAAGGATTTCACTGTCTAGTTCTCGGTTGGTAGCTTCTTTCTGGGTTGGTGAATTTGAAAAAACAAGAAATTGGAAACGAAGTAGAAAGATGTCTTCAACGTCAACAAATAAGACTGTGTGTTCTAAGACCAGCTGCGACCGATCAAAACACGCGGCTCATGTTGTTGCACAAACCCCAATTGATGCAAAGCTTCATGTTGACTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCGTCAGTTGATATCAACGCCGCATGTTCCACTAGCCATGTTCATGCATCCACTGTACAGTCATACCTTCAAAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTCCTTGCATATAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACACGCTGTGCCTAACATCGAGCAGCAAGAAGCTTTAACTTTTGGAACAGATGTACGAACACTTTTTCGTTTCCCAGGAGCTGCAGCTTTACAGAAAGCAGCTGACTTTAAGGAAGTTAATCTTCTCAATCCTATACTTGTCCACTGTAAAACTTCAGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTAATTATAGATCTGGAACCAGTTAATCCGGCTGATGTGCCAGTGACAGCAGCTGGGGCATTGAAATCGTATAAGCTAGCCGCCAAAGCCATATCAAAATTGCAGTCCTTGCCTAGTGGGAATATATCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGCGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGATGAGCATGGAGAAGTTGTAGCTGAATGCTGTCGGTCGGACTTAGAACCATATCTTGGTTTGCACTACCCAGCTACTGACATACCTCAAGCTTCAAGGTTTCTTTTCTTGAAGAATAAAGTTAGAATGATATGTGATTGTTTGGCACCTCCAGTTAAAGTGCTTCAAAACAGGAGATTGACTCAGGCATTAAGTCTATGTGGGTCAGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACGATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACTAGCCCTAGATTTGTTCCATTTCCTTTGCGATATGCTTGCGAATTCTTGATTCAAGTATTTGGTATACAGATTAACAAAGAGGTGGAGTTGCAAGCTCAGTTGAAGGAAAAACACATATTGCGAATTCAAACAGTTCTTTGTGATATGCTGCTAAGAGATGCTCCAGTAGGAATTGTTACTCAATCTCCCAATATTATGGATCTTGTTAAATGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGCTACTTGGAGTCACCCCAACAGAGGCACAAATTAGAAATATAGCTGAATGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCACTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACGTCTAAGGACTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGATCCTGGTGACGAGGATGATGGAAGAAAGATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAATTAATATTACGAGGTTCTTTACAGGATGAGAATGAAGAAGAATGCAAGGTGATTACAAACATCCCACTCCCACCATTTGATGAGAAGACACAACAGTTGGATGAATTGCGTGTCATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTTGGCAAGATCAACGGTTGGAACTCCAAAGCCACTGAGCTTACAGGATTGCCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTAGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTTAAAACATTTGGAATTCCAGGGCAAAATGGTCCGGTGATCTTAGAAGTTAACTCGTGTTGTAGCCGAGACCTAAACAATAATGTCGTAGGAATTTCTTTTATAGGGCAGGATGTTACGAAGCAAAAACTGGTTATGAACCAATACACCCAAATCCAAGGTGATTACATGGGGATTATGCGAAACCCATCTGCACTTATTCCTCCAATTTTTATGACTGATAGCGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGATAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTTGAAAACTTTGGCTGCCGTGTGAAAGATCACACATTGACCAAGCTTAGGATAATACTGCATAGAGTAATTTCAGGCCAGGATGCAGAGAAATCTTTGTTTAGGTTCTGTGATCGTGAAGGAAATTATGTTGAAACGTTGCTCACTGCAAGCAAAAGGACTGATGCAGAGGGTAATATCACTGGGGTTTTCTTCTTCTTGCACGTGGCTAGTCCAGAACTTCAATATGCTTTGGAGATGCAGCGGATTTCAGAACAAGCTACAGCTGAAAATCTCCACAAATTGGCATATCTACGTCAAGAAATTAAAAAACCCCTTGATGGGATTGCATTTATACAGAATCTAATGGGTTCATCTGACTTAAGCAAAGAGCAAATGTGGCTACTTAAATTGAACACTTCGAGTCGGGAACAATTTTACATGGAAACAAACTGTAGTGAATTCAACCTTGGAGATGTTCTTGACGTTGTAATGAATCAAAACATGATTTTGAGTCAAGAGCGTGGGGTGAAGATCATTTGTGAACCACCTACTGACGTGTCATCACTGCACTTATATGGAGATAACATGAGGCTACAGCAAGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCAGTTGCAAAGAATCATCAGTTGTCTTTAAAGCAACTCCAAGGAAGGAACGCATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGAATCACCCATCCCGCCCCGGGAATTCCTGTACACTTAATTCGGGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCTTATACATAAGCCAGAAGCTTCTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAGCATATTGCTAGATGA 3558 41.85 MYPLRRALEFLEVSWLVDSSREWTEESSRTVKKMWKNCSESCFRDHENLERISLSSSRLVASFWVGEFEKTRNWKRSRKMSSTSTNKTVCSKTSCDRSKHAAHVVAQTPIDAKLHVDFEGSERFFDYSASVDINAACSTSHVHASTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRFPGAAALQKAADFKEVNLLNPILVHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQNRRLTQALSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQAQLKEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYFRKKFWLLGVTPTEAQIRNIAEWLLKDHSGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDEDDGRKMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDENEEECKVITNIPLPPFDEKTQQLDELRVITNEMVRLIETAAVPILAVDVFGKINGWNSKATELTGLPIQQAIGMPLVDCLVNDSVKVVKKMLSLAIQGIEEKNIEIKLKTFGIPGQNGPVILEVNSCCSRDLNNNVVGISFIGQDVTKQKLVMNQYTQIQGDYMGIMRNPSALIPPIFMTDSDGRCLEWNDAMEKLSGFRRIEMTNRMLLGEVFTLENFGCRVKDHTLTKLRIILHRVISGQDAEKSLFRFCDREGNYVETLLTASKRTDAEGNITGVFFFLHVASPELQYALEMQRISEQATAENLHKLAYLRQEIKKPLDGIAFIQNLMGSSDLSKEQMWLLKLNTSSREQFYMETNCSEFNLGDVLDVVMNQNMILSQERGVKIICEPPTDVSSLHLYGDNMRLQQVLSEFLTNTLLFSCKESSVVFKATPRKERIGKGIHIVHLELRITHPAPGIPVHLIREMFDDNNDSSKEGLGLYISQKLLKIMNGTVQYLREAETSSFIILIEFPLVEHIAR 1185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2825204 2830953 - ClCG02G002860.2 Cla02g00291 266417

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00291 1185 CDD PAS 705 811 IPR000014 -
Cla02g00291 1185 SUPERFAMILY GAF domain-like 278 474 - -
Cla02g00291 1185 SMART gaf_1 298 487 IPR003018 GO:0005515
Cla02g00291 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 841 945 IPR035965 -
Cla02g00291 1185 Gene3D PAS domain 682 825 - -
Cla02g00291 1185 SUPERFAMILY GAF domain-like 485 665 - -
Cla02g00291 1185 SMART HKATPase_4 1067 1181 IPR003594 -
Cla02g00291 1185 ProSiteProfiles PAS repeat profile. 836 879 IPR000014 -
Cla02g00291 1185 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 298 467 IPR016132 -
Cla02g00291 1185 Pfam PAS fold 150 265 IPR013654 GO:0006355
Cla02g00291 1185 Pfam GAF domain 299 477 IPR003018 GO:0005515
Cla02g00291 1185 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1067 1173 IPR003594 -
Cla02g00291 1185 Gene3D - 482 655 IPR043150 -
Cla02g00291 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 154 267 IPR035965 -
Cla02g00291 1185 PANTHER PHYTOCHROME C 80 1181 - -
Cla02g00291 1185 CDD HATPase_Phy-like 1066 1177 IPR044767 -
Cla02g00291 1185 PRINTS Phytochrome signature 716 731 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 809 829 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 697 713 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 213 235 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 625 643 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 313 332 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 398 419 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 507 527 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 592 611 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 PRINTS Phytochrome signature 789 806 IPR001294 GO:0006355|GO:0009584
Cla02g00291 1185 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1024 1175 IPR036890 -
Cla02g00291 1185 SMART pas_2 696 762 IPR000014 -
Cla02g00291 1185 SMART pas_2 826 896 IPR000014 -
Cla02g00291 1185 Pfam PAS fold 697 811 IPR013767 GO:0006355
Cla02g00291 1185 Pfam PAS fold 837 948 IPR013767 GO:0006355
Cla02g00291 1185 SUPERFAMILY PYP-like sensor domain (PAS domain) 703 814 IPR035965 -
Cla02g00291 1185 ProSiteProfiles Histidine kinase domain profile. 977 1181 IPR005467 -
Cla02g00291 1185 Gene3D PAS domain 840 951 - -
Cla02g00291 1185 TIGRFAM sensory_box: PAS domain S-box protein 701 815 IPR000014 -
Cla02g00291 1185 TIGRFAM sensory_box: PAS domain S-box protein 841 947 IPR000014 -
Cla02g00291 1185 CDD PAS 838 948 IPR000014 -
Cla02g00291 1185 Gene3D - 279 638 IPR029016 -
Cla02g00291 1185 Pfam Phytochrome region 490 665 IPR013515 GO:0006355|GO:0009584
Cla02g00291 1185 ProSitePatterns Phytochrome chromophore attachment site signature. 398 407 IPR013516 -
Cla02g00291 1185 ProSiteProfiles PAS repeat profile. 694 764 IPR000014 -
Cla02g00291 1185 Gene3D PAS domain 153 401 - -
Cla02g00291 1185 PIRSF Phytochrome_conventional 81 1185 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cla02g00291 1185 Gene3D - 1005 1173 IPR036890 -
Cla02g00291 1185 PANTHER TWO-COMPONENT HISTIDINE KINASE 80 1181 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00291 - - - csv:101211915 2043.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00291 Cla-Chr2:2825204 Cla08g00910 Cla-Chr8:21593105 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00064 . 5 1220 Histidine Kinase Gene Family AT2G17820 64.2 0.0e+00 1453.0
Cla11g00097 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1344.7
Cla01g00654 . 24 981 Histidine Kinase Gene Family AT2G01830 67.6 0.0e+00 1238.8
Cla02g00275 . 279 1266 Histidine Kinase Gene Family AT2G01830 51.8 1.9e-269 926.0
Cla06g00204 . 97 1043 Histidine Kinase Gene Family AT2G01830 52.6 4.4e-263 904.8
Cla02g00917 . 304 1273 Histidine Kinase Gene Family AT2G01830 50.8 1.2e-260 896.7
Cla05g01652 . 1 997 Histidine Kinase Gene Family AT5G10720 57.3 8.8e-292 1000.0
Cla08g00910 . 156 1275 Histidine Kinase Gene Family AT1G09570 80.1 0.0e+00 1829.3
Cla08g00913 . 12 1104 Histidine Kinase Gene Family AT1G09570 71.7 0.0e+00 1574.7
Cla05g00707 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1196.0
Cla02g00291 . 97 1176 Histidine Kinase Gene Family AT1G09570 54.1 0.0e+00 1180.6
Cla05g00707 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.8 0.0e+00 1670.6
Cla03g00672 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.8 0.0e+00 1243.0
Cla08g00910 . 176 1209 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.8
Cla02g00291 . 105 1133 Histidine Kinase Gene Family AT2G18790 51.7 4.8e-308 1054.3
Cla08g00913 . 12 1038 Histidine Kinase Gene Family AT2G18790 50.9 9.4e-304 1040.0
Cla02g00291 . 91 1180 Histidine Kinase Gene Family AT5G35840 60.8 0.0e+00 1335.9
Cla05g00707 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.9 0.0e+00 1152.5
Cla08g00910 . 164 1269 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.8
Cla05g00707 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.7 0.0e+00 1708.7
Cla03g00672 . 32 1113 Histidine Kinase Gene Family AT4G16250 59.0 0.0e+00 1282.7
Cla08g00910 . 163 1270 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1135.6
Cla02g00291 . 105 1179 Histidine Kinase Gene Family AT4G16250 52.0 0.0e+00 1095.5
Cla03g00672 . 15 1113 Histidine Kinase Gene Family AT4G18130 63.2 0.0e+00 1370.5
Cla05g00707 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.9 0.0e+00 1272.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00291 Cla_Chr02 FPKM 1.210897 1.294222 0.95111 0.399266 1.122743 1.437696 1.694295 2.631501 2.606322 2.969573