Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00296 ATGCGGCGTCCACTCCCTCTCTCCGCCGCCGCCGCCTCGCTGGCCCTCCCTCTCTTCCTCCTCCTCCTCTTCTCCTCCGCTGCTGACGCCCACAACATCACCAGAATCTTAGCCAAACACCCTGAGTTCAGTACCTTCAACCACTACCTCACAATCACTCATCTCGCCGGCGAGATTAACCGCCGCCTCACCATCACCGTCCTCGCCTTAGACAACTCCGCCATGTCCGCCCTCCTCGACAAGCACTTCTCCGTCGGCACCATCAAGAATGTGCTCTCGCTTCACGTTCTCGTCGATTACTACGGCGCTAAAAAGCTTCACCAACTCTCTAAAGGAACTACGCTCTCTTCTACTCTGTTTCAGGCCACCGGCTCCGCCACCGGAACCTCTGGATATGTCAATATCACTAATCTGAAAGGCGGTAAAGTCGGATTTGGCTCTGAAGATAACGGCGGCGATCTGAATTCGTTTTATGTCAAATCGGTCGTGGAAATGCCTTACAATATCTCCATCTTGCAGATCAGTAAGGTGATAACATCCGCCGACGCGGAGGCGCCAACGGCGGCCCCGGTCAGTCTGAATCTGACGGAGGTTCTGCCGAAGCAAGGTTGCAAAGCTTTCTCCGATCTGTTAGTTGCCGCCGGCGCCATCGAGACTTATCAGTCGAATGTCGACGGTGGATTGACGATGTTTTGTCCAACGGAAGACGCACTCAACGCTTTTCTTCCAAAGTACAAGAACCTGACGGCGGCGCATAAAGTGTCACTGCTGTTGTACCACGGCATGCCGATTTACTTGTCGCTGCAGATGCTCAAATCGAACAACGGCGTCGTCAACACGCTGGCGACAGACGGTGGCGCCAAATACGATTTCGTCATCAAGACCGATGGCGAGGACGTTACGGTGAAAACGAAGGTTGTGACGGCGACGGTGACAGCGACGCTGATCGATTCGGAGCCGCTGATAGTGTACGAAGTCGACAAGGTGTTGCAGCCGAAGGAGCTTTTCAAGGCGGTGCCGGAGGAGAACGACGAGGCCCCGGCGCCGAAATCATCGCCGAAAAAGAAGACGAAAGCACCATCGCCTAAGGCGTCGGACGGGGAGGTGGCGGAGGATGCCGACTCGCCGATTGGCTCCGACGAATCCGATGGCGAGCCGGAGGATCAGACAGCGGACAAAAATGGGGCGTTTGGATCGAACGGTCAGAGATCGATCGTGGCGATGATGTTGAGTTTGTGGTTCGCTGTTTTGCTCGTATGA 1260 55.4 MRRPLPLSAAAASLALPLFLLLLFSSAADAHNITRILAKHPEFSTFNHYLTITHLAGEINRRLTITVLALDNSAMSALLDKHFSVGTIKNVLSLHVLVDYYGAKKLHQLSKGTTLSSTLFQATGSATGTSGYVNITNLKGGKVGFGSEDNGGDLNSFYVKSVVEMPYNISILQISKVITSADAEAPTAAPVSLNLTEVLPKQGCKAFSDLLVAAGAIETYQSNVDGGLTMFCPTEDALNAFLPKYKNLTAAHKVSLLLYHGMPIYLSLQMLKSNNGVVNTLATDGGAKYDFVIKTDGEDVTVKTKVVTATVTATLIDSEPLIVYEVDKVLQPKELFKAVPEENDEAPAPKSSPKKKTKAPSPKASDGEVAEDADSPIGSDESDGEPEDQTADKNGAFGSNGQRSIVAMMLSLWFAVLLV 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2864527 2867057 + ClCG02G002910.1 Cla02g00296 266422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00296 419 SUPERFAMILY FAS1 domain 188 333 IPR036378 -
Cla02g00296 419 ProSiteProfiles FAS1/BIgH3 domain profile. 30 178 IPR000782 -
Cla02g00296 419 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 417 IPR033254 -
Cla02g00296 419 MobiDBLite consensus disorder prediction 373 387 - -
Cla02g00296 419 SMART fasc_3 66 181 IPR000782 -
Cla02g00296 419 SMART fasc_3 229 333 IPR000782 -
Cla02g00296 419 Gene3D FAS1 domain 201 332 IPR036378 -
Cla02g00296 419 Gene3D FAS1 domain 29 178 IPR036378 -
Cla02g00296 419 ProSiteProfiles FAS1/BIgH3 domain profile. 191 330 IPR000782 -
Cla02g00296 419 SUPERFAMILY FAS1 domain 36 179 IPR036378 -
Cla02g00296 419 MobiDBLite consensus disorder prediction 340 399 - -
Cla02g00296 419 Pfam Fasciclin domain 204 332 IPR000782 -
Cla02g00296 419 Pfam Fasciclin domain 41 119 IPR000782 -
Cla02g00296 419 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 2 13 417 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00296 Cla02g00899 CCT
Cla02g00899 Cla02g00296 ECH
Cla02g00296 Cla02g00899 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00296 Cla-Chr2:2864527 Cla05g01788 Cla-Chr5:29756465 1.80E-41 dispersed
Cla03g00149 Cla-Chr3:1527419 Cla02g00296 Cla-Chr2:2864527 1.65E-32 transposed
Cla06g00028 Cla-Chr6:329160 Cla02g00296 Cla-Chr2:2864527 4.60E-95 transposed
Cla09g02079 Cla-Chr9:38320692 Cla02g00296 Cla-Chr2:2864527 5.24E-159 transposed
Cla10g00408 Cla-Chr10:5515940 Cla02g00296 Cla-Chr2:2864527 1.18E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00296 - - csv:101214167 678.322