Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00307 ATGGGTTACATTTGTGATTTCTGTGGGCAACAAAGGTCGATTGTGTACTGCCGCTCCGATGCTGCAGCTTTGTGCTTGTCTTGTGACCGAAATGTTCACTCTGCCAATGCCTTGTCAAGGCGTCACTCGAGAACATTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGACTATATGGGGCATAGCTCATCTGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCAGGCTGCCCGACAGCTGCAGAGCTCTCATCTATCTGGTCATTTGTTTTAGATCTCACTTCTGGAAGTGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCTTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCACATTATGGACCAACCCATTACTAGAGATGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAACTCGAAATTGAAGATGACCTCTACGAGACTTTGAATATGGATGAAGATAGTTTGAATATTGAAAACTATGAAGAACTATTTGGTGTATCTCTCAGTTATTCTGAAGAACTGCTAGAGAATGGTGGTATTGATAGTTTGTTCAGGTTGAAGAGCTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCGGCTGCTGCAGAGGGGGCGTCAGGCGGTTTTGTTAATAATGTGATGCAGCCTGCAAGCAGTAATGCAGCATCGGCAGATTCCGTGATGAGTTCGAAGACTGAACCGGTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCATTTTCTGGCATGACTGGAGAGAGTAGTGCAGGAGAACATCCAGACTGTGGAGCTTCATCAATGCTCCTAATGGGAGAACCTCCATGGTGTTCTATGACCACTGAGAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTATTGCGCTATAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTTAGGGCCGATACTCGAAGACGTGTCAAGGGACGCTTTGTCAAAGCTGGAGAAGCTTATGACTATGATCCTTTGAGTCAAACCAGAAGCTACTGA 1224 44.12 MGYICDFCGQQRSIVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLTSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFSSVDKSIWYGSSSMPHIMDQPITRDATSPKLHYPGTKGPELEIEDDLYETLNMDEDSLNIENYEELFGVSLSYSEELLENGGIDSLFRLKSLSAAKSGCPGAAAAEGASGGFVNNVMQPASSNAASADSVMSSKTEPVLCYNNKQEHSSLSFSGMTGESSAGEHPDCGASSMLLMGEPPWCSMTTESSFQSSNRSDAVLRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2983214 2988635 - ClCG02G003050.1 Cla02g00307 266433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00307 407 CDD Bbox1_BBX-like 4 47 - -
Cla02g00307 407 Pfam CCT motif 350 392 IPR010402 GO:0005515
Cla02g00307 407 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cla02g00307 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 407 - -
Cla02g00307 407 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 407 - -
Cla02g00307 407 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cla02g00307 407 ProSiteProfiles CCT domain profile. 350 392 IPR010402 GO:0005515
Cla02g00307 407 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00307 Cla-Chr2:2983214 Cla02g00819 Cla-Chr2:10875191 7.05E-52 dispersed
Cla05g01571 Cla-Chr5:26667556 Cla02g00307 Cla-Chr2:2983214 2.25E-10 dispersed
Cla02g00307 Cla-Chr2:2983214 Cla06g01299 Cla-Chr6:26345424 1.21E-09 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60585 PF06203 CCT 6.30E-16 CL0281 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00307 - - csv:101216326 764.607