Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00315 ATGGCTTCGAGTAGTAGCAAGGAACTTCTGTCTGGTTCTTCAGGCAACAAAAACGCTAAATCTGAAACATCCTCCTCGGACAATCCTCCTCCACAGGCAGCATCCCAAAGAACTACTTCTCCACAGGAAGCGCCCCAAAGAACTAATTCTATATTTGATGACCTGCCTCAGGACAATCCTTTTGATTTCTCATCCATGTCTGACATTCTTAATGATCCTAGCATCAAAGCATTAGCTGAACAGATAGCAAAAGATCCTTCATTCAACCAGATGGCCGAGCAGCTTCAACAATTTCAGAGTCCACCAGCTCAAGAAGGAATCCAGTTCGATCCTCAACAATACTTTTCCACCATGCAACAAGTCATGCAGAATCCTCATTTTATGTCTATGGCAGAGCGTCTTGGTAGCACATTAATGCAGGATCCATCTATGTCTCGAATGTTTGAGAGTTTTGCTAGTCCACCAGATGGTGATCATCTTGAGGAACGTATGGCTCAGATTAAAGAGGATCCTTCATTGAAGCCTATATTGGAAGAGATAGAGACTGGCGGTCTACCTTCCATGTTGAAGTACTGGAACGATAAAGAAGTCTTACAAAAGTTAGGGAAAGCAATGGGCCTTCCAATTCCAGCTGAGGCAGCTACTTCTGCTGACAATGCTGGGCTTGATGATTCTGAAGAACCGGAGAATGATGATGAATCAGTTGTTCATCATACTGCTAGCACTGGTGATGTTGAGGGATTAAAAAAGGCGCTTGCATCTGGTGCTGACAAGGATGAAGTTGATTCAGAAGGGAGGACGGCATTGCATTTTGCTAGTGGATATGGTGAGGTTGAATGTGCTCAAGTCCTCCTCGAGGCTGGAGCGAAAGTGGATGCTTTGGACAAGAATAAGAACACTGCCCTTCACTATGCAGCTGGTTATGGCCGAAAGGACTGTGTCGCCCTTCTCCTGGAAAACGGTGCTGCTGTTAAAACGTACACCACGGTTTGTGTTACCGTAAATCAGGAGGCCCCATTCTTTGAAATCGAAAAACCCAGGACTCTCACAAACATGGATGGAAAGACTCCAATCGATGTTGCCAAGCTAAACAACCAGAACGAGGTGCTGAAGTTGCTTGAAAAGGATGCCTTTCTGTAA 1140 45.0 MASSSSKELLSGSSGNKNAKSETSSSDNPPPQAASQRTTSPQEAPQRTNSIFDDLPQDNPFDFSSMSDILNDPSIKALAEQIAKDPSFNQMAEQLQQFQSPPAQEGIQFDPQQYFSTMQQVMQNPHFMSMAERLGSTLMQDPSMSRMFESFASPPDGDHLEERMAQIKEDPSLKPILEEIETGGLPSMLKYWNDKEVLQKLGKAMGLPIPAEAATSADNAGLDDSEEPENDDESVVHHTASTGDVEGLKKALASGADKDEVDSEGRTALHFASGYGEVECAQVLLEAGAKVDALDKNKNTALHYAAGYGRKDCVALLLENGAAVKTYTTVCVTVNQEAPFFEIEKPRTLTNMDGKTPIDVAKLNNQNEVLKLLEKDAFL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3055696 3059495 + ClCG02G003120.1 Cla02g00315 266441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00315 379 SUPERFAMILY Ankyrin repeat 229 373 IPR036770 -
Cla02g00315 379 SMART ANK_2a 264 293 IPR002110 GO:0005515
Cla02g00315 379 SMART ANK_2a 297 327 IPR002110 GO:0005515
Cla02g00315 379 SMART ANK_2a 231 260 IPR002110 GO:0005515
Cla02g00315 379 ProSiteProfiles Ankyrin repeat region circular profile. 297 324 - -
Cla02g00315 379 MobiDBLite consensus disorder prediction 1 69 - -
Cla02g00315 379 Gene3D - 302 376 IPR036770 -
Cla02g00315 379 Gene3D - 224 301 IPR036770 -
Cla02g00315 379 Pfam Ankyrin repeats (3 copies) 238 324 IPR002110 GO:0005515
Cla02g00315 379 PANTHER - 27 325 - -
Cla02g00315 379 PANTHER - 347 379 - -
Cla02g00315 379 ProSiteProfiles Ankyrin repeat profile. 297 329 IPR002110 GO:0005515
Cla02g00315 379 MobiDBLite consensus disorder prediction 216 247 - -
Cla02g00315 379 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 27 325 - -
Cla02g00315 379 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 347 379 - -
Cla02g00315 379 ProSiteProfiles Ankyrin repeat profile. 264 296 IPR002110 GO:0005515
Cla02g00315 379 ProSiteProfiles Ankyrin repeat region circular profile. 264 296 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00315 - - - csv:101216809 650.588
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00315 Cla02g01042 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00315 Cla-Chr2:3055696 Cla09g01326 Cla-Chr9:21182462 1.90E-15 dispersed
Cla07g01075 Cla-Chr7:27355154 Cla02g00315 Cla-Chr2:3055696 1.28E-08 transposed
Cla02g00315 Cla-Chr2:3055696 Cla02g01042 Cla-Chr2:21282575 6.54E-150 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00315 Cla_Chr02 FPKM 23.642424 24.377373 27.618567 28.611807 22.291544 20.183191 26.411526 23.684902 22.268093 25.07036