Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00317 ATGAAAGAAGGAGTGGGTTTCGTGAGTGTGGAACGAAGAGGTTGGATTCTGTTCTCCCTCGGTGACGATCATTGGGTTTCTCAAACGAAGTCTAGGGTTCCAGCGGATTCATCAGTGGAGAGGATTTATGATCAGAAAACCGATAGGCCATCTGAATCTTCATGGGGTCTGGAATTTCCCATTGCCATATCACAAATCTATGGCTCTGTTTCACTTTCATGCGGTCTTCTTTGGAGCAGATATTTCTGTTCACCAATGAAAATGATGAACCGGACAAATTTCATACTTGATGGAAAATTCATTGAAATCCCTGAAAAAATAGCTCTGAAACTTCTTCTTCTGCTTCCAACTTTGATATTTCGAGTGTGTATTGCTGGTGTATCGGGCAAAATGATCAAAAATAAAAAAAGTTCACTGTTGCGCAAAATATTCCCATTGGAACTTCTTCCTTGCAGTACATTTTGTACACATGCAAGAGAAAAAGATCAGAAAATGGATGAGAAGAGAGAAACCAAAGAGCCATCAAGCTCTAATCTCTCATCTTCTGCTCATCAAATCAGGCCTACAGAGAAGAGGACACCAGTTGAAGTCTTTCAAGTGCCTGCAAGGTCTGGAGATGGCCATTCCAAGGGGGAGAGTGATGCGACTCATGAGCAGGATGAGGCAAAATCATCCCTCTCTTCCTTTCGTCCTGCTGCCAGCATGGAAGCATCCAGAAAGTGGATGGCATTTGAAAATGAAAACTTTAATATAACAGAAACGTACACAAAGAACTTCAGTGGTAGCTTTGGGTCATATTCTACTGATCTCTTGGAAACAAACATAACAAAAAGGCCGGCAGAGGAGAACAAGATTGATCATTTATCATCACTGCAACTGACATATGTGATCTCAGATGCAACAAAACCAGATTGCCCCATCATGTTTGCCAGCAATAGGTTCTTGGTTATGACTGGCTATACACTGGAGGAGGTCATCGGAAGGAACTGCCGGTTTCTTCAAGGACCAGAAACAGATAAGAATGAAGTCGCCAAAATACGAGATGCAATTAGAAAGGGGAATAGTTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAAGATTCCCATGGCAACATCATCAAATTTATTGGAATGCAGGTTGAGATCGCCAAAAACACAGAAGAAAAAGAGAGAACCATGAAGTCCATGTCCATTACAGAGTTCCAAGCTGTGAAAAGTCTAAGATGTCACATTCAGTCAAAAAGGCATGATGCTGATACAAAGCACGAAGACCAAGAAATGACTGATGCTGATTATGCTCTGTACAAGGCTCTGGATATTGATGAGAATATTAGCACATCTGATAACCAAAAGGCTCGGTTCAAAGAAAGGACTCTAGGTTCTGCAGTAGAACGTGAAGAAAAGACAGTTGTTGAGGCATCTGTTTTCAATCCCAGGGATGGTGATTGTGTTGCTAAAAGAGAAAGGGACATATGTCAAGGAATTGAGTTGGCTACCACATTGGAACGGATTGAGAAGATATTTTTTATCACTAACCCAAGGCTTCCTGATAATCCTATTATATTCGCATCTCATAGGTTTCTTGATTCTACAGAATACTCATGTGAAGAAATTCTGGGGAGAAACTTTTGGTTTCTTCAGGGACCTGAAACAGATCAAGCAACTGTCTCAAAGATAAACAATGCAATTGAAGAGCAGAGAGAAATCACTCTTCAGATAATCAACTATACAAAGAGTGGAAAAAAGTTCTCGAATGTATTCCACTTGCAACCCATGTGGGATCAAAAGAAGGGGGAGCTTCAATATTTCATTGCGGCACAACTTCATCTAAAACCTTCAAGAGGCTGGCTTTTAGATCAAACGGAGCATGAAATTGCTAAGCTGGCCAAAGCTGTAGCTGAGAATGTTGACAAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAAACCAAAGAACTTCTGGGCAATCTACTGTCAGCCAGTCTTGCCAAGGCCTCACAAGAAGTACATTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATTGGACTCCATCATTTTAAGCCAATAAGACCTCTGGGTTTTGGAGACATTGGCAGTGTTCATCTCGTACAACTAAACGGAACAGGTGAACTCTTTGCTATGAAGGCTATAGAAAAGTCAGTAATATTAAATCGAAACAAGGTTCATCGAGCATGCATGGAAAGGGAAATCATATCACTTCTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACGCCTACGCACATTTTTCTTATTATGGACTTCTGCCCCGGTGGAGAGTTATTTACATTTCTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTAGGTTCTATGCTGCAGAAGTTGTCATTGCTTTGGAGTATCTTCACTGTTTAGGTATTATCTACAGGGACCTAAAACCTGAAAATATTCTACTCCAGAAAGATGGACATATCATCCTCACTGATTTTGATTTATCGTTTAAGACGTCTAGCATACAAACCATAGAATCTTCAACCCCAAGAAAGAAGACATGTAGGCATAAATCACTGCCGATGGTCGTCGTTGAACCTATGGCAGAACTGAATTCATTCATTGGAACTGAAGAGTACATTGCCCCAGAGATCATAATGGGTGCAGGCCATGGTAGTTCTATTGACTGGTGGACTCTAGGTATCTTATTGTATGAAATGCTCTATGGTCGCACTCCCTTCAAAGGCAAAAACAGGAATAAAACTTTTGCCAATATTTTGTTCAAGGACTTGACCTTCCCCATTAGTATTCAGGCAAGTCTTGCAGCAAAACAACTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCGAGGACCGGTGCTGATGAAATCAAACGACATCCATTTTTCCGTCAAATAAATTGGCCTAAAATTCGAACCATGACACCACCATCACCAGAAGTAGCCCTTCAAATAATTGAGAGAGATCCAAAAGCTAATGATTTGAAGTGGGAAGATGGAATGCTCAGTCTTTCAGTGGGTGCTGCTGATATTTTCTGA 3120 41.25 MKEGVGFVSVERRGWILFSLGDDHWVSQTKSRVPADSSVERIYDQKTDRPSESSWGLEFPIAISQIYGSVSLSCGLLWSRYFCSPMKMMNRTNFILDGKFIEIPEKIALKLLLLLPTLIFRVCIAGVSGKMIKNKKSSLLRKIFPLELLPCSTFCTHAREKDQKMDEKRETKEPSSSNLSSSAHQIRPTEKRTPVEVFQVPARSGDGHSKGESDATHEQDEAKSSLSSFRPAASMEASRKWMAFENENFNITETYTKNFSGSFGSYSTDLLETNITKRPAEENKIDHLSSLQLTYVISDATKPDCPIMFASNRFLVMTGYTLEEVIGRNCRFLQGPETDKNEVAKIRDAIRKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKFIGMQVEIAKNTEEKERTMKSMSITEFQAVKSLRCHIQSKRHDADTKHEDQEMTDADYALYKALDIDENISTSDNQKARFKERTLGSAVEREEKTVVEASVFNPRDGDCVAKRERDICQGIELATTLERIEKIFFITNPRLPDNPIIFASHRFLDSTEYSCEEILGRNFWFLQGPETDQATVSKINNAIEEQREITLQIINYTKSGKKFSNVFHLQPMWDQKKGELQYFIAAQLHLKPSRGWLLDQTEHEIAKLAKAVAENVDKAVRELPDANLKPKNFWAIYCQPVLPRPHKKYIPSWIAIQKITSHGEKIGLHHFKPIRPLGFGDIGSVHLVQLNGTGELFAMKAIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTPTHIFLIMDFCPGGELFTFLDKQPMKMFKEEAARFYAAEVVIALEYLHCLGIIYRDLKPENILLQKDGHIILTDFDLSFKTSSIQTIESSTPRKKTCRHKSLPMVVVEPMAELNSFIGTEEYIAPEIIMGAGHGSSIDWWTLGILLYEMLYGRTPFKGKNRNKTFANILFKDLTFPISIQASLAAKQLIDALLQRDPARRLGSRTGADEIKRHPFFRQINWPKIRTMTPPSPEVALQIIERDPKANDLKWEDGMLSLSVGAADIF 1039
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3073844 3088234 + ClCG02G003140.2 Cla02g00317 266443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00317 1039 ProSiteProfiles PAS repeat profile. 280 353 IPR000014 -
Cla02g00317 1039 Pfam PAS domain 301 396 IPR000014 -
Cla02g00317 1039 Pfam PAS domain 529 619 IPR000014 -
Cla02g00317 1039 SMART pas_2 282 351 IPR000014 -
Cla02g00317 1039 SMART pas_2 509 578 IPR000014 -
Cla02g00317 1039 MobiDBLite consensus disorder prediction 160 174 - -
Cla02g00317 1039 SUPERFAMILY PYP-like sensor domain (PAS domain) 301 394 IPR035965 -
Cla02g00317 1039 Gene3D Phosphorylase Kinase; domain 1 704 788 - -
Cla02g00317 1039 MobiDBLite consensus disorder prediction 160 230 - -
Cla02g00317 1039 Gene3D Transferase(Phosphotransferase) domain 1 789 1004 - -
Cla02g00317 1039 ProSiteProfiles Protein kinase domain profile. 705 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00317 1039 PANTHER BNAA02G07840D PROTEIN 280 402 - -
Cla02g00317 1039 PANTHER BNAA02G07840D PROTEIN 477 1033 - -
Cla02g00317 1039 Gene3D PAS domain 295 453 - -
Cla02g00317 1039 PANTHER BNAC03G12530D PROTEIN 456 1033 - -
Cla02g00317 1039 PANTHER BNAC03G12530D PROTEIN 278 402 - -
Cla02g00317 1039 CDD PAS 307 396 IPR000014 -
Cla02g00317 1039 SMART pac_2 584 627 IPR001610 -
Cla02g00317 1039 SMART pac_2 357 399 IPR001610 -
Cla02g00317 1039 PANTHER FLIPPASE KINASE 1-RELATED 456 1033 - -
Cla02g00317 1039 PANTHER FLIPPASE KINASE 1-RELATED 280 402 - -
Cla02g00317 1039 PANTHER FLIPPASE KINASE 1-RELATED 477 1033 - -
Cla02g00317 1039 PANTHER FLIPPASE KINASE 1-RELATED 278 402 - -
Cla02g00317 1039 SMART serkin_6 705 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00317 1039 ProSiteProfiles PAC domain profile. 354 408 IPR000700 -
Cla02g00317 1039 MobiDBLite consensus disorder prediction 207 224 - -
Cla02g00317 1039 CDD PAS 521 616 IPR000014 -
Cla02g00317 1039 TIGRFAM sensory_box: PAS domain S-box protein 307 404 IPR000014 -
Cla02g00317 1039 TIGRFAM sensory_box: PAS domain S-box protein 533 618 IPR000014 -
Cla02g00317 1039 SUPERFAMILY PYP-like sensor domain (PAS domain) 522 618 IPR035965 -
Cla02g00317 1039 Pfam Protein kinase domain 707 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00317 1039 Gene3D PAS domain 496 657 - -
Cla02g00317 1039 SUPERFAMILY Protein kinase-like (PK-like) 682 1016 IPR011009 -
Cla02g00317 1039 CDD STKc_phototropin_like 703 1004 - -
Cla02g00317 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 826 838 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00317 Cla02g01047 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00317 Cla-Chr2:3073844 Cla02g02020 Cla-Chr2:35196819 1.38E-14 dispersed
Cla05g00610 Cla-Chr5:5635987 Cla02g00317 Cla-Chr2:3073844 2.50E-35 transposed
Cla06g01626 Cla-Chr6:29787123 Cla02g00317 Cla-Chr2:3073844 2.63E-59 transposed
Cla11g01178 Cla-Chr11:24694370 Cla02g00317 Cla-Chr2:3073844 6.34E-06 transposed
Cla01g02066 Cla-Chr1:35111622 Cla02g00317 Cla-Chr2:3073844 4.48E-103 wgd
Cla02g00317 Cla-Chr2:3073844 Cla02g01047 Cla-Chr2:21465560 1.86E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80324 PF00069 Pkinase 1.10E-62 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00317 K20715 - csv:101213364 1536.16