Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00322 ATGGATAATGAGGTGATTGAATTTGATATGGGATTGGGAGGAGGGAGTGGGAGGGAGGGAGATGACTACTCTATGGGTATTGTGCATCATTCCATTGAGGATGAGGAAATGGTTGATAGCCCTCCTCTCAGCAGTCTTGGTGGTGGTGCTGGCAGTGGTGAGATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGATGGAATGGAATTTGAGTCTGAAGAAGCTGCCAAGGCTTTCTATAATTCATATGCTCGGCGTGTTGGGTTTAGTACTCGTGTCAGCTCCTCCCGTCGGTCTAGGCGTGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTTAGGAATATGAATGAGAAGCGAACTAAAGACAGAGAAATTAAGCGTCCTCGAACCATCACAAGAGTAGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTATCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCGGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACAGAGGTGGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGAGACATTCAACTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCTAACTTCTTCTATGCTGTTCAGGGTGAGGAGGATCAGTGTGTGGGCAATGTCTTTTGGGCCGATCCAAAAGCTCGAATGAACTATACTTACTTTGGTGATACTGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCGTTCACTGGGGTGAATCACCATGGACAGCCGGTTTTGTTTGGTTGTGCTTTTCTGATAAATGAATCCGAAGCGTCATTTAATTGGCTATTTAGAACATGGCTTTTGGCAATGTCTGGTCGCCCACCTGTGTCAATTACTACTGATCACGATGCAGTAATACAGTCAGCCATCACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTGTCTCATGTGTTTCTTAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAACTTGACTGACTCTATCGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATACGATCTCAGGGATCATGAGTGGCTTCAGACAATTTACTCTGCTCGGAGGCAGTGGATTCCTGTATATTTGCGGGACACTTTTTTTGCCGAAATGTCGATTACACAGCGAAGTGATAGCATGAATTCTTATTTTGATGGATATGTGAATGCTTCGACCAATTTGAGTCAGTTCTTTAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAGGAAGTGAAAGCAGATTATGATACGATGAACACTTCCCCTGTTCTAAAGACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAGCTGTTCTCAAGGTTCCAAGAGGAGTTAGTTGGCACACTAACTTTTATGGCTTCGAAAGCTGATGATGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGAGAGGATCATAAAGCTCACTATGTGAAATTTAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTTGAGTTCTCAGGTCTTCTGTGCAGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTACTACATATTGAAACGATGGACAAGAAATGCAAAAAGTAATGTGATATTGGAGGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTGCGCCACGAGGCTTTTAAATTTATAGAGGAAGGAGCAAAGACTCTGGATATGTATAATGTGGCTAAACATGCCCTTCAGGAGGCTGCTAAAAGGGTTGCTCATACGACGAGGAATGATGGCAAAATTTCTACAATCAATGGGCGAATTAAAGTGGACCCTGTAAATGTCAGAAGCTATAAAAATCACAGTGGTAGCAGGGATCATGACGAGAGCTTGAGTAAAAACATGTCTGAGGATGACTTGGACAAGAAAATCAATGAACTTACTAATGAATTGGCGTGTGCGAATCGGAAGTGTGAAGTTTATCGGTCTAATCTTTTTTCAGTGCTGAAAGACATTGAGGACCACAAGTTGCAATTATCTATAAAAGTGCAGAACATAAAAATTAGTATGAAAGACAGCATTTGA 2373 41.8 MDNEVIEFDMGLGGGSGREGDDYSMGIVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYDGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDAVIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWIPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCRHILAVFRVTNVLTLPSYYILKRWTRNAKSNVILEDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTLDMYNVAKHALQEAAKRVAHTTRNDGKISTINGRIKVDPVNVRSYKNHSGSRDHDESLSKNMSEDDLDKKINELTNELACANRKCEVYRSNLFSVLKDIEDHKLQLSIKVQNIKISMKDSI 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3124389 3132759 - ClCG02G003190.1 Cla02g00322 266448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00322 790 Pfam MULE transposase domain 294 387 IPR018289 -
Cla02g00322 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Cla02g00322 790 SMART 26again6 585 612 IPR006564 GO:0008270
Cla02g00322 790 Pfam SWIM zinc finger 562 608 IPR007527 GO:0008270
Cla02g00322 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 40 763 - -
Cla02g00322 790 Coils Coil 733 760 - -
Cla02g00322 790 MobiDBLite consensus disorder prediction 713 733 - -
Cla02g00322 790 MobiDBLite consensus disorder prediction 716 733 - -
Cla02g00322 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 763 IPR031052 GO:0006355
Cla02g00322 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00322 - - - csv:101218471 1530.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00322 Cla02g01052 CCT
Cla02g00322 Cla02g01052 ECH
Cla02g01052 Cla02g00322 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02078 Cla-Chr1:35182243 Cla02g00322 Cla-Chr2:3124389 2.98E-74 dispersed
Cla02g00322 Cla-Chr2:3124389 Cla02g01052 Cla-Chr2:21735913 0 dispersed
Cla02g01386 Cla-Chr2:28286033 Cla02g00322 Cla-Chr2:3124389 2.18E-10 dispersed
Cla10g01642 Cla-Chr10:32047930 Cla02g00322 Cla-Chr2:3124389 4.51E-06 dispersed
Cla11g00046 Cla-Chr11:609312 Cla02g00322 Cla-Chr2:3124389 3.11E-84 dispersed
Cla02g00322 Cla-Chr2:3124389 Cla07g01040 Cla-Chr7:26868459 3.25E-155 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g320 . . . . . . . . . . . Cma20g00708 . Car20g00607 . . . . . . . . . . Cla02g00322 Cam02g0331 Cec02g0331 Cco02g0335 Clacu02g0321 Cmu02g0320 Cre02g0653 . . Cone3ag1258 . . . . . . . . . . . . . . . Cmo20g00702 . . Car11g01433 . Cpe16g00358 . . . . . . . . Cla02g01052 Cam02g1123 Cec02g1127 Cco02g1163 Clacu02g1110 Cmu02g1074 Cre02g1378 Lsi11g01315 . . Cme11g01021
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60588 PF10551 MULE 3.70E-29 CL0219 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00322 Cla_Chr02 FPKM 66.774292 66.897827 137.673019 150.727951 32.858273 30.245234 31.344193 54.39994 55.181889 55.603741