Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00325 ATGGATGTTTTCACTCAAGCACCAACCAAGAAGACAATAATGTCCGATTTGAACTCCGCCGTCCACGGCGGCTCCTCTCGTTACGCCGATCAATTTTTCGGTTCAGAGCTCCAACTTCAAAATTTCTCACAAACCCATCTCGCCGATCCCAACAACTCGCCGGAAAGTCACCAGAAAAATCTCAATCCGGCCGATTCTACCACCCCCACTAGCGGCGGTTCGTCCACGCGCCGTTCTCGTGGCCGCCCCGCCGGCTCCAAGAACAAGCCAAAACCGCCGGTGATTGTAACACGTGACAGCCCCAATGCTCTGAGATCGCACGTGCTGGAGGTCTCCGCCGGCTCCGATGTGGTCGAATCCGTCTCGAGTTACGCCACGCGCCGCCGCCACGGCGTTTGCATTCTCGCCGGCACCGGCGCCGTCACAAACGTCAACTTGCGCCAGCCGGCGGCGCCGTCGGGAACTGTTATGACGCTTCATGGAACGTTTGAGATTGTGTCTCTGACTGGTACGGCGTTGCCACCGCCGGCGCCTCCGGGTGCCGGAGGGATAACTGTTTATTTGTCCGGCGGGCAAGGGCAGGTCGTCGGAGGAAGTGTTGTCGGGCCGTTGACGGCGTCAAGTCCCGTTGTATTGATGGTGGCATCGTTTACTAATGCGGTGTATGATCGGCTGCCGCTGGACGAGGCGGAGCCGCCGGTGCAAGCTCAGCCATCGGCATCACCATCTTCAGATATTACAGGTGGAGGCGGGCAGCTTGGGGGCATCGGAAGCTTCAACCTGCCCGACGACAATTACGGTTGGAATGGCAATACATCGAGGCCTCCGACGACGCTGTGA 840 58.93 MDVFTQAPTKKTIMSDLNSAVHGGSSRYADQFFGSELQLQNFSQTHLADPNNSPESHQKNLNPADSTTPTSGGSSTRRSRGRPAGSKNKPKPPVIVTRDSPNALRSHVLEVSAGSDVVESVSSYATRRRHGVCILAGTGAVTNVNLRQPAAPSGTVMTLHGTFEIVSLTGTALPPPAPPGAGGITVYLSGGQGQVVGGSVVGPLTASSPVVLMVASFTNAVYDRLPLDEAEPPVQAQPSASPSSDITGGGGQLGGIGSFNLPDDNYGWNGNTSRPPTTL 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3145490 3149599 - ClCG02G003210.2 Cla02g00325 266451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00325 279 Gene3D - 104 233 - -
Cla02g00325 279 ProSiteProfiles PPC domain profile profile. 101 239 IPR005175 -
Cla02g00325 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 23 258 - -
Cla02g00325 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 219 IPR005175 -
Cla02g00325 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 23 258 IPR014476 GO:0003680
Cla02g00325 279 CDD DUF296 105 171 IPR005175 -
Cla02g00325 279 MobiDBLite consensus disorder prediction 46 102 - -
Cla02g00325 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 233 - -
Cla02g00325 279 MobiDBLite consensus disorder prediction 264 279 - -
Cla02g00325 279 MobiDBLite consensus disorder prediction 230 279 - -
Cla02g00325 279 MobiDBLite consensus disorder prediction 46 81 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00325 Cla-Chr2:3145490 Cla06g00062 Cla-Chr6:653729 1.89E-62 dispersed
Cla02g00325 Cla-Chr2:3145490 Cla05g00274 Cla-Chr5:2486749 6.99E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00325 - - cmo:103492556 355.14