Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00328 ATGAGTTTCATAGCAACTCCTCCGTCGCCGACAATTCTCAGTCCGCCGTTCAATTTACCGAGCTATGGCGGGAAAGCATCCTGCCTACGACTAGGCAGCGCGGAGGGATATCGGAGAGTGACTATGAGAGGCGGAAGTGAAAACCGGAAGCCATTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCGGTGCAGTCGTTGAAGCGAGCCAAGAAAGATTTACAACAATTGGACCGAGTGCATGATGCCAAACTTAGGCGTTTATTGAAGTTCGATATGATGGCTGTCCTTCGCGAGCTCCTTCGCCAGAACGAGTGTTCTCTGGCTCTTAAGGTTTTCGAAGATGTTAGAAATGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTACAGTATTGGCTAGCAATGGATTGTTCGAACGAGTAGAAATTATTCATTCGTACTTGAAAGCAGAAGCTGACTTAGCACCTGAAATTGACGGGTTTAATGCTCTTTTGAAGGCCTTGGTTTGTCATAACTTAGGTGAACTTGCGATGGAGTCGTATTACTTGATGAAAGAAGTAGGTTGTGAGCCAGATAAGGCTTCCTTCAGGATTCTCATAAAAGGATTGGAATCAACGGGAGAGGCAGTTGATTTAAGAACTGTGAAGCAGGATGCACAAAAGCTTTATGGTGAATCACTTGAGTTTCTAGAGGAAGAAGAAGAGACAGCTACAGCCATATCTATGCACTGA 750 45.47 MSFIATPPSPTILSPPFNLPSYGGKASCLRLGSAEGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRAKKDLQQLDRVHDAKLRRLLKFDMMAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIITVLASNGLFERVEIIHSYLKAEADLAPEIDGFNALLKALVCHNLGELAMESYYLMKEVGCEPDKASFRILIKGLESTGEAVDLRTVKQDAQKLYGESLEFLEEEEETATAISMH 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3217996 3219327 + ClCG02G003250.1 Cla02g00328 266454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00328 249 Coils Coil 69 89 - -
Cla02g00328 249 TIGRFAM PPR: pentatricopeptide repeat domain 167 198 IPR002885 -
Cla02g00328 249 Pfam PPR repeat family 165 209 IPR002885 -
Cla02g00328 249 Gene3D Tetratricopeptide repeat domain 57 228 IPR011990 GO:0005515
Cla02g00328 249 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 26 244 IPR044190 GO:0000373|GO:0003723|GO:0009658
Cla02g00328 249 PANTHER THYLAKOID ASSEMBLY8 26 244 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00328 - - - csv:101215459 400.208
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00328 Cla-Chr2:3217996 Cla07g01431 Cla-Chr7:31523689 2.24E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g313 . . . . . . . . . . . . . . Sed12g0547 . . Bhi05g01544 Tan02g0542 Cmetu07g1477 Lac12g0451 Hepe02g0347 . . Cla02g00328 Cam02g0337 Cec02g0337 Cco02g0341 Clacu02g0328 Cmu02g0326 Cre02g0659 Cone12ag1287 Cone8ag1344 . . . Csa07g00214 . . Blo04g00612 . . Bda14g00655 Bpe15g00773 . Bma03g00646 . . . . . Cma19g00815 . Car19g00633 . . . . . . . . . . . . . . . . Lsi11g01309 . Chy01g00567 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011049 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00328 Cla_Chr02 FPKM 15.160589 19.074663 17.245821 15.713572 18.208002 14.937402 14.680765 23.761883 25.339632 25.443068