Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00332 ATGGCTTTCTCTACCTTCTCCAAAACAACCCTCATCCTTTCTGCAACTTTATTCATCACTTACGCTATCGCCCATGATTTCTCGATTGTAGGCTATTCCCCCGAGCACTTAGCCTCCATGGATAAAACCATTGAGCTGTTTGAGTCATGGATGTCAAAGCACAGTAAAACTTATCGGAGTATTGAAGAGAAGCTCCATAGATTTGAGATCTTCATTGACAATTTGAAGCACATTGACGAGACAAACAAGAAGGTTTCTAGCTATTGGTTGGGGTTGAATGAATTTGCAGACCTGAGCCATGAAGAGTTTAAGAGTAAATATTTGGGATTGAAAGTTGAGTTTCCGAGGAAAAGGTCGTCTCGTGGATTTAGTTATAGAGATGTTAAGGACTTGCCCGAGTCGGTTGATTGGAGAAGTAAAGGAGCTGTTACTCCTGTCAAGAACCAAGGCTCTTGTGGGAGTTGCTGGGCATTTTCGACCGTGGCGGCAGTGGAGGGGATAAACCAAATTGTCACTGGAAATCTAACCTCTTTGTCCGAACAAGAATTGATCGACTGTGACCGAAGCTTCAACAATGGGTGCTATGGCGGTTTGATGGATTACGCCTTCCAATACATAATGTCGAATTCTGGACTCCGAAAGGAGGAAGACTACCCATATCTAATGGAGGAAGGAAGATGTATCAGAGAAAAGGAACAATTTGAGGTAGTAACCATTAGCGGTTACGAAGACGTGCCAGCCAACGATGAACAGAGTCTCCTAAAAGCATTGAGTCACCAACCTGTCAGTGTAGCCATTGAGGCTTCTGGCAGAAATTTCCAATTTTATAAAGGAGGAATATTCACAGGTCGTTGTGGAACCGACATGGATCACGGCGTGACAGCCGTTGGATATGGTTCATCACAGGGAACCGACTACATTATAGTAAAGAATTCATGGGGACCAAAATGGGGAGAAAATGGATATATTAGGATGAAGAGAAATACAGGAAAACCTGAAGGATTATGTGGAATCAACCAAATGGCTTCTTATCCAACCAAGGAGAAATAA 1050 42.95 MAFSTFSKTTLILSATLFITYAIAHDFSIVGYSPEHLASMDKTIELFESWMSKHSKTYRSIEEKLHRFEIFIDNLKHIDETNKKVSSYWLGLNEFADLSHEEFKSKYLGLKVEFPRKRSSRGFSYRDVKDLPESVDWRSKGAVTPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRSFNNGCYGGLMDYAFQYIMSNSGLRKEEDYPYLMEEGRCIREKEQFEVVTISGYEDVPANDEQSLLKALSHQPVSVAIEASGRNFQFYKGGIFTGRCGTDMDHGVTAVGYGSSQGTDYIIVKNSWGPKWGENGYIRMKRNTGKPEGLCGINQMASYPTKEK 349
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3252199 3253659 - ClCG02G003300.1 Cla02g00332 266458

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00332 349 Gene3D Cysteine proteinases 26 348 - -
Cla02g00332 349 CDD Peptidase_C1A 132 345 IPR039417 -
Cla02g00332 349 SUPERFAMILY Cysteine proteinases 42 346 IPR038765 -
Cla02g00332 349 Pfam Papain family cysteine protease 131 346 IPR000668 GO:0006508|GO:0008234
Cla02g00332 349 PANTHER CYSTEINE PROTEASE XCP1-LIKE 24 347 - -
Cla02g00332 349 SMART pept_c1 131 346 IPR000668 GO:0006508|GO:0008234
Cla02g00332 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
Cla02g00332 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 306 325 IPR025661 -
Cla02g00332 349 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 24 347 - -
Cla02g00332 349 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Cla02g00332 349 PRINTS Papain cysteine protease (C1) family signature 291 301 IPR000668 GO:0006508|GO:0008234
Cla02g00332 349 PRINTS Papain cysteine protease (C1) family signature 306 312 IPR000668 GO:0006508|GO:0008234
Cla02g00332 349 PRINTS Papain cysteine protease (C1) family signature 149 164 IPR000668 GO:0006508|GO:0008234
Cla02g00332 349 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 289 299 IPR025660 -
Cla02g00332 349 SMART Inhibitor_I29_2 47 103 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00332 K16290 XCP; xylem cysteine proteinase [EC:3.4.22.-] - csv:101206340 696.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00332 Cla-Chr2:3252199 Cla11g01846 Cla-Chr11:32039763 0 dispersed
Cla08g00338 Cla-Chr8:8084681 Cla02g00332 Cla-Chr2:3252199 1.42E-72 dispersed
Cla02g00332 Cla-Chr2:3252199 Cla02g00624 Cla-Chr2:6955198 4.64E-129 transposed
Cla02g00332 Cla-Chr2:3252199 Cla01g01665 Cla-Chr1:31545388 5.48E-124 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g306 . . . . . . . . . Cmo11g01798 . . . . Sed05g2142 Cpe04g00640 . Bhi05g01552 Tan02g0549 Cmetu01g0266 Lac12g0456 Hepe02g0352 . . Cla02g00332 Cam02g0341 Cec02g0342 Cco02g0346 Clacu02g0332 Cmu02g0330 Cre02g0662 Cone12ag1288 Cone8ag1342 . Cone10ag1012 . Csa07g00207 . . Blo04g00610 Blo13g00466 . Bda14g00652 Bpe15g00777 . . . . . . Cma11g01323 . Car11g01424 . . . . . . . . . . . . . . . . . Lsi11g01302 . Chy01g00573 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002657 1 2 2 0 1 1 3 1 1 2 2 2 2 2 2 2 1 3 2 2 2 2 2 2 2 2 2 2 2 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00332 Cla_Chr02 FPKM 5.468758 5.865098 6.547129 6.248918 5.043269 5.290205 5.695782 7.660971 8.381162 9.404609