Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00340 ATGAGTATGGTTTGGCTTCTTTTAGTACTTGTTTGTATTCAAGGAATTTCAGAAGGGGCCTCAAGAAATGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTCAATGGGAAAGTTTCCAAGATTGCCATTGAAGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGAGGAAGAAAGCTATCTATTTCCATATATGATGCAAATTATAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTGTCTGACACAGTTGCCATCCTTGGTCCACAAGATTCTACAATGGCTCATACACTCTCACATCTTTCTAATGAACTCCATATCCCGTTACTCTCATTTACAGCATTGGACCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAATTTCAAATGACTGCAATTGCTGATATGATTCATTATTACGGTTGGCATGACGTCGTTGTGGTTTTCACCGACGACGATCAATGTCGAAACAGTATGATTGAATTAGGTGATAAACTTGAAGAGAGAAGCTTGAAAATTTCCTCTAAAGTGCCACTCCCCCCTTACCCAACAGCAACAAGAACTCAAGTTCAAGATGCATTGGTAAAGATCAAAATGATGGAATCTCGAGTAATCGTATTGTACACGTTTTCGAAAACCGGTTTCTTGGTTTTCGAAGTGGCTCAAAGCCTTAGAATGATGGGAGCTGGTTATGTTTGGATAACCTCTAGTTGGCTATCAACAGTAATAGATTCTACTTCACCACTTCCTTTGAAAATTGCCAACTCCATCCAAGGAGTTCTTACACTTCGTCTACACACGCCCGATTCGAAAATGAAACGATCTTTTATATCGAGATGGAACAAGCTGAGTAATGGCTCCTCAATTGGGTTGAATACGTATGGCCTATATGCTTATGATACTGTTTGGATGGTTGCAAGAGGAGTGAAAAAGTTATTGGATCAAAATGGAACTATCTCATTCTCCAAAGTTACAAATGCTGGTAATCTTAGTGGAGAGACTTTGGATTTTAGTTCATTGGGAATCTTTAATGAAGGAAATGATTTGCTTAACTATTTATTGAATATCAGTATGACTGGTTTAACAGGGCCTATTAAGTTTCTAGATAAATCCCCTTTACATCCTTCATATGATATCTTAAATGTAGTGAAATCTGGTATGAAGAGAATCGGATATTGGTCTAACTATTCCGGTTTGTCTGTCGTGGCGCCCGAAACGTTGTATGGCAAAGCAATTAATCGTTCTATGTTAACCGAACAGTTAAGCAGCACAATGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTACCGCTCGATGGAAGGCGGCTAAGAATCGGCGTTCCACGCAGAGTTAGTTATCAGGAATTCGTGACACCGGGAAATGGAAATGGTACAATCAAAGGATACTGCATTGATGTGTTCACTGCTGCTGTCAACTTGCTTCCATATGCAGTTACTTATGAGTTCATTTTGTTTGGAGATGGTGAGAAGAATCCTAGCTACCTTGAGCTTGTAAATAAAGTTGCTTTGAAAGAATTTGATGCTGCTGTTGGTGACATTGCTATTGTGACTAGTCGGACAAGGATCGTCGATTTTACGCAGCCTTATATCGACTCGGGGCTAGTAGTTCTGGCCCCTGCAAAGAAGTTGAATTCAAGTCCTTTGGCATTCCTTCGCCCATTCACACCAATGATGTGGGCTGTCACAGCAGCATTTTTCTTCCTCATTGGATTAGTTGTGTGGATGTTGGAACATCGGAAAAACGACGAATTTCGAGGGCATCCTAGGACACAAATTGTCACAATCCTCTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCGTGAGCACGCTCGGTCGTTTCGTGATAGTCGTGTGGCTTTTTGTGGTTCTAATTATCAACTCGAGCTACACCGCTAACCTGACATCGATATTCACAGTACAACTAGCCACCTCATCTATCACAGGAATCGATTCATTGATATCTAGCAATGTGCATATAGGATTCCAAGTTGGTTCATTTGCTGAAAGTTATTTAAGTGAGCAACTTAATGTCCAAAAGTCTAGGCTCATTGCTCTTGGATCCCCAGAAGAGTATGCTGCCGCTCTCAAGAACGGAACGGTCGGTGCTATTGTCGACGAGCAACCATACATCGACCTCTTTCTCACCGAGTATTGCGATTATTTGATAAGGGGCCAACAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCACGAGACTCTCCATTGGCGGTAGACTTATCGACCGCCATACTCACACTCTCAGAGAACGGCCATCTTCAGAAGATTCACGACAAGTGGTTCTCAAGAAAATCTTGCAGTTCAGGAGATTCCGATCTAAATTCAGAGCAACTTCACTTGCAGAGCTTCATCGGATTGTTCTCCATTTGTGCCGGCGTGTGTTTGTTCGCTCTTTTGCTTCATTTTTTCTTGACCATGTGTCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGACCACCGGTACCGGTGGCGATGGCGGTGGCGGTGCCTGCCCTACGGCGCTGCGAAATTTCTTTTCGTTTGCAGATAAGAAGAAGGAAAGAAAGACGAGCTATTCGAAGAGGAAGGTCGAAGATACATTCTCGAGTGAACGTGGAGAGGATTAG 2724 42.14 MSMVWLLLVLVCIQGISEGASRNEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIYDANYSGFLGITGAMKYMVSDTVAILGPQDSTMAHTLSHLSNELHIPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMIHYYGWHDVVVVFTDDDQCRNSMIELGDKLEERSLKISSKVPLPPYPTATRTQVQDALVKIKMMESRVIVLYTFSKTGFLVFEVAQSLRMMGAGYVWITSSWLSTVIDSTSPLPLKIANSIQGVLTLRLHTPDSKMKRSFISRWNKLSNGSSIGLNTYGLYAYDTVWMVARGVKKLLDQNGTISFSKVTNAGNLSGETLDFSSLGIFNEGNDLLNYLLNISMTGLTGPIKFLDKSPLHPSYDILNVVKSGMKRIGYWSNYSGLSVVAPETLYGKAINRSMLTEQLSSTMWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGNGNGTIKGYCIDVFTAAVNLLPYAVTYEFILFGDGEKNPSYLELVNKVALKEFDAAVGDIAIVTSRTRIVDFTQPYIDSGLVVLAPAKKLNSSPLAFLRPFTPMMWAVTAAFFFLIGLVVWMLEHRKNDEFRGHPRTQIVTILWFGFSTMFFAQRENVVSTLGRFVIVVWLFVVLIINSSYTANLTSIFTVQLATSSITGIDSLISSNVHIGFQVGSFAESYLSEQLNVQKSRLIALGSPEEYAAALKNGTVGAIVDEQPYIDLFLTEYCDYLIRGQQFTKSGWGFAFPRDSPLAVDLSTAILTLSENGHLQKIHDKWFSRKSCSSGDSDLNSEQLHLQSFIGLFSICAGVCLFALLLHFFLTMCQFNRHLKQDPEASTTGTGGDGGGGACPTALRNFFSFADKKKERKTSYSKRKVEDTFSSERGED 907
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3312003 3317650 - ClCG02G003380.2 Cla02g00340 266466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00340 907 Gene3D - 573 714 - -
Cla02g00340 907 Gene3D - 740 805 - -
Cla02g00340 907 PIRSF IGluLR_plant 1 902 IPR017103 -
Cla02g00340 907 CDD GluR_Plant 460 798 - -
Cla02g00340 907 Gene3D - 44 390 - -
Cla02g00340 907 Gene3D - 456 572 - -
Cla02g00340 907 Pfam Bacterial extracellular solute-binding proteins, family 3 478 799 IPR001638 -
Cla02g00340 907 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 895 - -
Cla02g00340 907 Pfam Receptor family ligand binding region 44 400 IPR001828 -
Cla02g00340 907 Gene3D - 141 415 - -
Cla02g00340 907 PANTHER GLUTAMATE RECEPTOR 3.3 10 895 - -
Cla02g00340 907 SMART GluR_14 463 800 IPR001320 GO:0015276|GO:0016020
Cla02g00340 907 SUPERFAMILY Periplasmic binding protein-like I 20 453 IPR028082 -
Cla02g00340 907 SUPERFAMILY Periplasmic binding protein-like II 438 800 - -
Cla02g00340 907 MobiDBLite consensus disorder prediction 884 907 - -
Cla02g00340 907 Pfam Ligand-gated ion channel 800 830 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00340 Cla-Chr2:3312003 Cla02g00838 Cla-Chr2:11431775 0 dispersed
Cla01g02042 Cla-Chr1:34928727 Cla02g00340 Cla-Chr2:3312003 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00340 K05387 - csv:101208602 1573.91