Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g00353 | ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTCGCCATTCCTTTTGAACTTCAAATGATTGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATTACTCCTCCATGTACTGAGTGTGGGAAAAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAGAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA | 855 | 44.09 | MNAHINSVSIASSSSSPLDLAIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3451511 | 3452365 | - | ClCG02G003500.1 | Cla02g00353 | 266479 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g00353 | 284 | SMART | c2h2final6 | 166 | 188 | IPR013087 | - | |
| Cla02g00353 | 284 | SMART | c2h2final6 | 79 | 101 | IPR013087 | - | |
| Cla02g00353 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 81 | 101 | IPR013087 | - | |
| Cla02g00353 | 284 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 27 | 284 | - | - | |
| Cla02g00353 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 79 | 106 | IPR013087 | - | |
| Cla02g00353 | 284 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 27 | 284 | - | - | |
| Cla02g00353 | 284 | Gene3D | Classic Zinc Finger | 39 | 193 | - | - | |
| Cla02g00353 | 284 | MobiDBLite | consensus disorder prediction | 34 | 74 | - | - | |
| Cla02g00353 | 284 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 166 | 193 | IPR013087 | - | |
| Cla02g00353 | 284 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 188 | IPR036236 | - | |
| Cla02g00353 | 284 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 168 | 188 | IPR013087 | - | |
| Cla02g00353 | 284 | Pfam | C2H2-type zinc finger | 165 | 189 | - | - | |
| Cla02g00353 | 284 | Pfam | C2H2-type zinc finger | 81 | 103 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00353 | Cla-Chr2:3451511 | Cla05g00027 | Cla-Chr5:389337 | 1.69E-13 | dispersed | |
| Cla10g00020 | Cla-Chr10:325909 | Cla02g00353 | Cla-Chr2:3451511 | 2.38E-08 | dispersed | |
| Cla02g00972 | Cla-Chr2:15961564 | Cla02g00353 | Cla-Chr2:3451511 | 5.74E-29 | transposed | |
| Cla10g00357 | Cla-Chr10:4761298 | Cla02g00353 | Cla-Chr2:3451511 | 1.94E-09 | transposed | |
| Cla10g00368 | Cla-Chr10:4919937 | Cla02g00353 | Cla-Chr2:3451511 | 9.35E-10 | transposed | |
| Cla01g02034 | Cla-Chr1:34879573 | Cla02g00353 | Cla-Chr2:3451511 | 1.08E-08 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60589 | PF13912 | zf-C2H2_6 | 6.90E-10 | CL0361 | Cla | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g00353 | - | - | cmax:111468261 | 382.104 |