Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00353 ATGAATGCACATATCAACTCCGTCTCCATTGCCAGTAGTAGCAGCTCTCCTCTCGATCTCGCCATTCCTTTTGAACTTCAAATGATTGAAACTACAACGTCTCTCGACTCCAATCGCCGCCGTCCTCGCAAGAAACGGTCAAGAATAGAAAAAGACTCCACCGTCACCACTGCCGCCGTCTCTTCCAAGGCTAAGTATAGCAAGAAACCCGATCCTAATGCACCCAAGATTACTCCTCCATGTACTGAGTGTGGGAAAAGATTTTGGTCAGATAAAGCGCTTTTCGGTCACATGAGGTGTCATCCTGAACGTCAATGGCGGGGAATTAATCCGCCTCTTAATTTCCGTCGTTCGATTTCTGTTTCTCCTTTTAGCCCTAATATCGCTACTGATTTAGAAGACTCTTCGTTTACTGAAGAAGATCAAGACATTGCTAATTGCTTGCTAATGCTTGCGAATAGCCCTAATTCGATTTCTAGGGTTTCCGATTGTCGATTCGAATGCTCGAGTTGTAAGAAAGTGTTTGGATCGCATCAAGCGCTTGGTGGACATAGGGCAAGTCATAAGAATGTGAGAGGCTGTTTCGCTATCGCAAAGAGCGATGAAGAAACAGAAGATGAAATTACTCTGTTTGGCCATGACAGGAGTATCAATCTGGAGAATAGAATGTCGATGATGATTTTAGGAACAGCAGAGCATAAATGTAGTGGCCACAAGAGATTCCATTGGGAGAATAATGCAGCTGCAGAAGAAGGTTTTGTTAATTTGGACTTGAACATGCCTGCTCCTCTTGAAGATGGTTCATCTTCTTCATATTCTTCAAGCCTCACTCTGGATCTCAGGTTGGGCCTTTGA 855 44.09 MNAHINSVSIASSSSSPLDLAIPFELQMIETTTSLDSNRRRPRKKRSRIEKDSTVTTAAVSSKAKYSKKPDPNAPKITPPCTECGKRFWSDKALFGHMRCHPERQWRGINPPLNFRRSISVSPFSPNIATDLEDSSFTEEDQDIANCLLMLANSPNSISRVSDCRFECSSCKKVFGSHQALGGHRASHKNVRGCFAIAKSDEETEDEITLFGHDRSINLENRMSMMILGTAEHKCSGHKRFHWENNAAAEEGFVNLDLNMPAPLEDGSSSSYSSSLTLDLRLGL 284
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3451511 3452365 - ClCG02G003500.1 Cla02g00353 266479
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00353 284 SMART c2h2final6 166 188 IPR013087 -
Cla02g00353 284 SMART c2h2final6 79 101 IPR013087 -
Cla02g00353 284 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Cla02g00353 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 27 284 - -
Cla02g00353 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Cla02g00353 284 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 27 284 - -
Cla02g00353 284 Gene3D Classic Zinc Finger 39 193 - -
Cla02g00353 284 MobiDBLite consensus disorder prediction 34 74 - -
Cla02g00353 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Cla02g00353 284 SUPERFAMILY beta-beta-alpha zinc fingers 80 188 IPR036236 -
Cla02g00353 284 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Cla02g00353 284 Pfam C2H2-type zinc finger 165 189 - -
Cla02g00353 284 Pfam C2H2-type zinc finger 81 103 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00353 Cla-Chr2:3451511 Cla05g00027 Cla-Chr5:389337 1.69E-13 dispersed
Cla10g00020 Cla-Chr10:325909 Cla02g00353 Cla-Chr2:3451511 2.38E-08 dispersed
Cla02g00972 Cla-Chr2:15961564 Cla02g00353 Cla-Chr2:3451511 5.74E-29 transposed
Cla10g00357 Cla-Chr10:4761298 Cla02g00353 Cla-Chr2:3451511 1.94E-09 transposed
Cla10g00368 Cla-Chr10:4919937 Cla02g00353 Cla-Chr2:3451511 9.35E-10 transposed
Cla01g02034 Cla-Chr1:34879573 Cla02g00353 Cla-Chr2:3451511 1.08E-08 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60589 PF13912 zf-C2H2_6 6.90E-10 CL0361 Cla TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00353 - - cmax:111468261 382.104