Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00365 ATGGATGCCTCAGCTTTGAACCCAAGAAACTCTCATCATATTCGCTCGAACAGCTTGCCTTCAAAGCCGCACCCGTTCATCGAACAAGTTGATGAGCACTTGTGTAGATTGAAGGAGGCCTCAGAAGCTACATCATCTTCCTCATTTGAATTATGCCATAAACTAAATGGCCTTCAAGATTTGCATGATTGCGTTGATAGGTTGCTTCTGCTGCCTCTCACCCAACATATTCTTGTTGACGAGAGTGATAAGAAATGGTTCAATGATTTACTCAAAGGATCTGTAAGACTCTTGGATTTGTGTGACATAGCTAAGGATGCATTGTTGCAGACGAAAGAATGTGTCCATGAACTAGAGTCAGTTTTGCGTAGGGGAAGGGGAGGAAAAATGTTCATAGAAAGTGAACTTCGGAAATGCTTAAGTTCTAGGAAGTTGATAAAGAAAACAATCTATAAAGCCTTGAAGACAGTCGAAACCAAAAGTTGTGAGACAAATCAAGCCACTCCAGCCATTGTTAGCTCGTTGAAACAGGTAGAAGCCGTCAGTTACAACATTGTTGAGTCCTTGTTGTCTTTCATAGCAGGACCCAAGTTTCCATCAAATTCAAGCCGTTGGTCTTTGGTTGTGAAGCTTGTGCAACCCAAAAGGGTTGCCTGTGAAGTTGAAGAAACAAGTAAAAATGAGGTGGCACTGGTAGATGCTGCATTACATTCGATTACCAGTCAAAAAACAAAGAAATCTGATTTCCTTGTTCAAGACGACAATTTGCAGAGCTCATTGAAGATATTTAGTTCAAACATTCAAGAAGTTGAAGGGGATCTTGAGGCTCTATATAGGCGCCTTATTAAATCTAGAGTTTCACTTCTCAACATCTTGAACTACTAA 885 40.56 MDASALNPRNSHHIRSNSLPSKPHPFIEQVDEHLCRLKEASEATSSSSFELCHKLNGLQDLHDCVDRLLLLPLTQHILVDESDKKWFNDLLKGSVRLLDLCDIAKDALLQTKECVHELESVLRRGRGGKMFIESELRKCLSSRKLIKKTIYKALKTVETKSCETNQATPAIVSSLKQVEAVSYNIVESLLSFIAGPKFPSNSSRWSLVVKLVQPKRVACEVEETSKNEVALVDAALHSITSQKTKKSDFLVQDDNLQSSLKIFSSNIQEVEGDLEALYRRLIKSRVSLLNILNY 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3553338 3554222 + ClCG02G003593.1 Cla02g00365 266491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00365 294 PANTHER BPS1-LIKE PROTEIN 1 293 - -
Cla02g00365 294 Pfam Protein BPS1 54 291 IPR004320 GO:0048364|GO:0048367
Cla02g00365 294 PANTHER - 1 293 - -
Cla02g00365 294 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00365 - - - csv:101217079 511.146
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00363 Cla-Chr2:3547487 Cla02g00365 Cla-Chr2:3553338 4.26E-174 dispersed
Cla02g00365 Cla-Chr2:3553338 Cla02g00369 Cla-Chr2:3564041 7.87E-111 dispersed
Cla02g00364 Cla-Chr2:3550735 Cla02g00365 Cla-Chr2:3553338 2.26E-107 tandem
Cla02g00365 Cla-Chr2:3553338 Cla02g00366 Cla-Chr2:3556042 2.07E-99 tandem
Cla01g02023 Cla-Chr1:34797219 Cla02g00365 Cla-Chr2:3553338 1.27E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g248 . . . . . . . . Cmo19g00803 . . . . . . . . Bhi05g01613 Tan02g0597 Cmetu01g0372 . . . . Cla02g00365 . . Cco02g0379 Clacu02g0365 Cmu02g0362 Cre02g0694 . . . . . Csa07g00165 . Cme01g01168 . . . . . . . . . . . . Cma19g00788 . . . . . . . . . . . . . . . . . . Lsi11g01268 . Chy01g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00365 Cla_Chr02 FPKM 42.445953 44.829918 25.008644 22.204981 23.894217 24.653639 25.655954 34.739391 36.083118 32.47216