Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00367 ATGGGTTTGCTAAGCTTTTGGCTTCTCCAATTGAGAAAGAAAATGGATTCCTTAGATATGAACTCAAAGAAATCACTCCACATTCGTTCAAATAGCTTACCCTCAAAGCCACATCCAATCGTTGCCCAAGTTGATGAAAATTTGTGCAGATTGAAGTCCTCTGAGGCCACGTCTTCAACTTCTTCTTTACGCCACAGACTCAGCAGCCTTCAAGATTTGCATGATTCCATTGATAAGTTACTTCTTCTACCATGCACCCAGAAAAATCTTGTCCATGAGAGTGGTAACAAATGGGCTGATGACTTGCTAGAAGGATCTCTAAGGCTCTTAGATTTGTGTGATATTGCTAAGAATGCGTTGTTGCAGACACGAGAATGTACACACGAACTTGAATCAGTTTTGCGCAGAAGAAGAACTGAAACAATTATCACAAGTGATCTTCAGAAATGCTTGAATTCTAGGAAAATGATAAAGAAGACAGTCCACAAGGCCTTGAAGGGAATCAAAATCAGGAGTTCTCAAAAAAGTGAAGAAAGCTCAGCAACTGTTAGCTTGTTAAAGGAAGTAGAAGCAATCACATATGGCACTGTTGAATCAGTATTGTCCTTCGTAGCAGGACCAAAGTTGCCATCAAAGTTGAGTAGATGGTCTTTGATCTCCAAGCTTGTACAATCCAAAAGGGTTGCCAGCATAGATGAAGATGCAAATACAAATGAGGTAGAAATGGTGGATACCACACTAAATTCAATCGCCAGCCACACAACAGATAAATCCTTCAATTTCCAGGACTTGCTGAGGAAATTTGGGTCAAGTATTCAAGATCTTGAAGAAGATCTCGAGAGTCTATATAGGCACCTTATCAGAAATAGAGTCTCCCTTCTCAACATCCTAAATAACTAA 900 39.78 MGLLSFWLLQLRKKMDSLDMNSKKSLHIRSNSLPSKPHPIVAQVDENLCRLKSSEATSSTSSLRHRLSSLQDLHDSIDKLLLLPCTQKNLVHESGNKWADDLLEGSLRLLDLCDIAKNALLQTRECTHELESVLRRRRTETIITSDLQKCLNSRKMIKKTVHKALKGIKIRSSQKSEESSATVSLLKEVEAITYGTVESVLSFVAGPKLPSKLSRWSLISKLVQSKRVASIDEDANTNEVEMVDTTLNSIASHTTDKSFNFQDLLRKFGSSIQDLEEDLESLYRHLIRNRVSLLNILNN 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3557237 3559390 + ClCG02G003595.1 Cla02g00367 266493

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00367 299 Pfam Protein BPS1 67 296 IPR004320 GO:0048364|GO:0048367
Cla02g00367 299 PANTHER BPS1-LIKE PROTEIN 20 298 - -
Cla02g00367 299 PANTHER DUF241 DOMAIN PROTEIN 20 298 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00367 - - - csv:101220720 406.757
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00367 Cla-Chr2:3557237 Cla02g00369 Cla-Chr2:3564041 5.80E-145 dispersed
Cla02g00366 Cla-Chr2:3556042 Cla02g00367 Cla-Chr2:3557237 7.30E-100 tandem
Cla02g00367 Cla-Chr2:3557237 Cla02g00368 Cla-Chr2:3560559 8.41E-21 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g247 . . . . . . . . Cmo19g00802 . . . . . . . . Bhi05g01614 . . . . . . Cla02g00367 . . Cco02g0380 Clacu02g0367 Cmu02g0364 Cre02g0697 . . . . . Csa07g00164 . Cme01g01171 . . . . . . . . . . . . Cma19g00787 . . . . . . . . . . . . . . . . . . Lsi11g01267 . Chy01g00626 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00367 Cla_Chr02 FPKM 2.837137 4.144622 3.626375 4.514635 17.722935 18.946857 18.381407 2.742886 2.874618 3.06287