Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00379 ATGCCTTTCTTCCTCCCTCTTCTCATCCTCTCACTCTTCTCTTCTGCCTCTGCTTGTGATCGTTGTGTTCATCAAGCCAAAGCCGCCTTCTACCAAGACGAGTCCGCCGGTTTATATAGAGGCGCCTGTGGCTATGGCGATCTTACATTGCAGCTCTCAAATGGCTACTTCTCTGCCATTATGCCTCCTCTTTACAAGTACGGCGCTGGGTGTGGCGCTTGTTTTCAAGTAAGATGCAAGAATGAGAAAATTTGTAGTAAAGAAGGGACGAAAATTATTGTCACAGATCGAAATGATAATACATATACAGGATTGGTTCTTAGTCAGAAGGCTTTTGGTGAAATGGCTGTGAGTGGAAAAGATGGATTGCTATTGAGTTATGGAGTTGTGGATGTTGAATTCAAAAGGATTCCTTGTGAATACAATAACAAAAACTTGTTGGTTAGAGTGGAAGAATGGAGTCAATATCCTAATTACTTAGCCATTAAATTGCTTAACCAAGGTGGCCAAACAGAAATAGTAGCGATCGATATAGCTCAGGTTGGTTACTCGAATTGGGATTATATGGGTAGAAATTATGGAGCTGTATGGGAGACTAAAAAACCATTACCGAAAGGACCATTGCAGTTGCGGTTCGTGGTGACTTCTGGATATGATGGAAAGTGGATTTGGGCAAAGTACGTACTTCCTGCTGACTGGAGACCTGGATTGATTTACGATACTGGAGTTCAAATCTCCGACATTGCTAAAGAAGGTTGTCCAACAGAACAATGTGGTGATGGACAATGGAAACGATAG 798 42.23 MPFFLPLLILSLFSSASACDRCVHQAKAAFYQDESAGLYRGACGYGDLTLQLSNGYFSAIMPPLYKYGAGCGACFQVRCKNEKICSKEGTKIIVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYNNKNLLVRVEEWSQYPNYLAIKLLNQGGQTEIVAIDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQISDIAKEGCPTEQCGDGQWKR 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3631958 3633403 - ClCG02G003620.1 Cla02g00379 266505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00379 265 Pfam Lytic transglycolase 60 133 IPR009009 -
Cla02g00379 265 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cla02g00379 265 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cla02g00379 265 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cla02g00379 265 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cla02g00379 265 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cla02g00379 265 Gene3D - 10 140 IPR036908 -
Cla02g00379 265 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
Cla02g00379 265 Gene3D - 141 245 IPR036749 -
Cla02g00379 265 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Cla02g00379 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cla02g00379 265 SUPERFAMILY PHL pollen allergen 144 240 IPR036749 -
Cla02g00379 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cla02g00379 265 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cla02g00379 265 PANTHER EXPANSIN-B3 5 260 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00379 Cla-Chr2:3631958 Cla02g00381 Cla-Chr2:3685389 6.57E-78 dispersed
Cla02g00379 Cla-Chr2:3631958 Cla02g00380 Cla-Chr2:3639270 8.97E-31 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00379 - - csv:101217243 526.168