Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00380 ATGGCACTTTATCTTGGTCTTCTCTTCTTTCTGGTTTCTTCTGCCGCTGCTACTACTTGTGATCGTTGTGTTCATCAATCCAAAGTTGCTTATTACTACGATGATACGCCTATTTCACATGGGGCATGTGGATATGGGCCTTTGGCATTTGAATTATCCAATGGATATGTTGCTGCTGTTGTCCCTTCCCTTTACAAACAGGGAGCTGGATGTGGTGCCTGTTTCCAGAGATTTTGCAGCAGTGTTGGAACTAAAGTGGTTGCAACAGATCAAAATTATGATAACAGATATGACTTTGTTCTCAGCAAAAAAGCATACTCTTCAATGGCTTTAAAGAACAAGACTAAACAACTTGTCAATCTTGGGACTGTTGATGTGGAATATAAGAGGATACCTTGTACATACAGAAACAAGAATTTGTTGGTGAGAGTGGAAGAATGGAGCCAAAAGCCATACTATTTGGCCCTTAAATTCCTTTACCAAGGTGGGCAGACAGAAATAACAAGAGTTGAAATAGCTGAAGTTGGTTCAGATGATTGGGAAAGCATGAAGAGAAATTATGGAGCAATTTGGGATGTAAACAAACAACTTGAGGGAGCATTGCAATTGAAGATAGTTGTAACTTCAGAGAACAATAAAAATGAGAATCTATATTGGGCAAGTAATGATCTTCCTGAGGATTGGCAAAATGGAGAGACTTATGATACTGGAATTCAAATTAATAACATTGCTAAAGAAACATGCCCAAGAAATCAGTGTGATGGAGGAGCATGTGGGTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTTTCAGCTGCTGTGCCTTCTCTCTACAAACAAGGAGCTGGGACCAAAGTAGTGTTGACAGATCAAAATTATGATACAAGAGCAGATTTTGTTCTAAGTAGAAAGGCTTTTTCAGCCATGGCTTTGAAAGGAAAAGATCAACAACTTTTGAATACTGGGATTGTTGATGTAGAATACAAGAGGATACCTTGTGGATACAAAAACAAAAATTTGGCCGTACGAGTTGAAGAATCAAGATACGATGGAAAATGGGTTTGGGCAGAATATGTTCTTCCTGTTGATTGGAAAATTGGAGCCATTTACGATACTGGAGTTCAGATTTATGATATTGCTAAAGAGGGTTGCCTTGCATCACAGTGTGATGGAGGTGCTTGTGGTTATGCAAATTTAGCATTGCAAATCTCTCAAGGCTACTTTGCAGCTGCTGTCCCTTCCCTTTACAAGGGAGGAGCAGGTTGTGGCGCTTGCTACCAAGTAAGATGCAAAGACAAACATCTATGCAATACTGCAGGGACTAAAATAGTTTTGACAGATCAAAATAATGATAATAGAACAGATATTGTTCTTAGTAAGAAAGCTTTCTCTGCAATGGCTTTAAGAGGAAAAGCTCAACAACTTTTGAATACTGGACTCGTCGATGTAGAATACAAAAGGATACCTTGTGAATACAAAAATAAAAATCTATTGGTACAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCAATCAAATTCCTATATCAAGGAGGTCAAACAGACATACAAGTGGTTAACATAGCTCAGGTGGGTTTACCAAAATGGCGCCCTATGAAAAGAAATTATGGACCTATTTGGGATATTAATAGTGTGCCTGAAGGAGGATTACAATTGAGAATGGTAGTAAGTTCAAGATATGATAATGGAAAATGGATTTGGGCAGGTTTTTTCAAATTAATGATATTGCTTTTGAATATTGCCCTCCTTGGCAATGTGATGATGGACAATGGAAATAAAGAAAATAGACTGGGAATTCTCTCCATTCTCCTTTGTCAAAAATGGCTTGGTTTCTCAGCTTTCTCTTTCTCTTTTTCATCTCTTCTGCTAATGCTTGTGATCGATATGGGGGAGCATGTGGCTATGGCAACTTGGCATTGCAGTTCTCCAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTTTATAAACAAGGAGCTGGTTGTGGGGCTTGCTATCAAGTGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAACAATGACAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTTCAGATCTTTTGAATCTTGGGTTAGCAATTAAATATTTGTACCAAGGTGGTCAAACAGACATGGTTGCTGTTGATATAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTACGGAGCTGTTTGGGAAACAGACAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTAACTTCTGGCTACGACGGCAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGGGCGATTTACGATACTGGAGTCCAAATCAACGATGTTGCCAAAGAGAGTTGCCCTCCTTGGCAATGTGGAAAAAAAAAAAAAAAACGCTTTAAACTCGATCGAAGAGTAAAGATGGCTTGGTTTTTTACCTTTCTTCTTTTCTTTATTGTCTCTTCAGCTAATGCTTGTGATCGTTGTATTTTTCAATCTAAGGCCGCTCATTACTATGAGGATACACCTACTTCATATGGAGGTGCATGTGGGTATGAAAATTTGGCCTTGGAAATGTCTCGAGGCTATTTTGCAGCTGCTGTCCCTTCTCTCTACCGACAAGGAATGGGTTGTGGTGCCTGCTACCAGGTAAGATGCAAGAATGCAACATTGTGTAACGCAATGGGGACCAAAGTAGTTTTGACAGATCAAAATTCTGATAACAGAACAGATTTTGTTCTTAGTAAAAAAGCTTTTTCTGCAATGGCTTTAAAGGGCAAAGGTCAAGAACTTTTGAAAACTGGAATGGTTGATATTGAATACAAGAGGATACCTTGCGAATACAATAAAAATTTATTAATACAAGTAGTAGAATGGAGCCACAAACCATATTATTTGGCTATTAAATTCCTCTACCAAGGAGGTCAAACCGACATAACTGCGGTCAACATAGCAGCTCAGGATGGTTCTGGAGAGTGGCAATACATGAAAAGAAACTATGGAGCCATTTGGGATACAAATAAAGTGCCAGAAGGGGCAATTAAGTTAGTGGTGATTGTAGTTTCAGGGTACAAAAATGGGAGAGGGATCATGATGAGTTATGCACTTCCTAGTGATTGGAAAAATGGAGAAATTTATGATACTGGAATTCAAATCAAAGATATTGCTTCTGAAGCTTGCAATCCTTGGCAATGTGCAAAATTAATGGCTTGGTTTCTTGATTCTCTCTTTCTCTTTTTCATTTCTTCTGCTAATGCTTGTGATCGTTGTGTTTATCAATCTAAAGCTAGCCACCTTTATGATTCACCTACTACATATGGAGGGGCATGTGGTTATGGCAATGTGGCCTTGCAATTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCCCTTTATAGACAAGGAGCTGGTTGTGGTGCTTGCTATCAGGTGAGATGCAAAAACAGAAGGCTTTGTAACACCGTAGGGGCTAAAGTGGTATTGACAGATCAAAATAACGATAACGTGACAGATCTTGTTCTTAGTAAGAGAGCTTTCTTTACAATGGCTTTAAATGGCAAAGGTGCAGACCTGGTGCCTTGCGAATACAAATATAAGAATTTGCTGGTGCAAGTGGAAGAAGCAAGTTATAATCCATTTTACTTGGCTATTAAATTCTTGTACCAAGGTGGCCAAACAGATATAGTAGCTGTGGACATAGCTCAAGTAGGCACCTCTGATTGGAGCCATATGAACAGAAATTATGGAGCTGTCTGGGAAACTAACAACATACCTGAAGGAGCATTACAATTGAGGATGGTAGTGACTTCTGGATACGATGGAAAGTGGGTTTGGGCAAAATCCGTACTTCCTACTAATTGGAAAAGTGGAGCAATTTACGATACTGGAGTTCAAATCAAAGATATTGCGAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATAACCTATGGAAATGA 4053 39.5 MALYLGLLFFLVSSAAATTCDRCVHQSKVAYYYDDTPISHGACGYGPLAFELSNGYVAAVVPSLYKQGAGCGACFQRFCSSVGTKVVATDQNYDNRYDFVLSKKAYSSMALKNKTKQLVNLGTVDVEYKRIPCTYRNKNLLVRVEEWSQKPYYLALKFLYQGGQTEITRVEIAEVGSDDWESMKRNYGAIWDVNKQLEGALQLKIVVTSENNKNENLYWASNDLPEDWQNGETYDTGIQINNIAKETCPRNQCDGGACGYGDLALEFTNGYFSAAVPSLYKQGAGTKVVLTDQNYDTRADFVLSRKAFSAMALKGKDQQLLNTGIVDVEYKRIPCGYKNKNLAVRVEESRYDGKWVWAEYVLPVDWKIGAIYDTGVQIYDIAKEGCLASQCDGGACGYANLALQISQGYFAAAVPSLYKGGAGCGACYQVRCKDKHLCNTAGTKIVLTDQNNDNRTDIVLSKKAFSAMALRGKAQQLLNTGLVDVEYKRIPCEYKNKNLLVQVVEWSHKPYYLAIKFLYQGGQTDIQVVNIAQVGLPKWRPMKRNYGPIWDINSVPEGGLQLRMVVSSRYDNGKWIWAGFFKLMILLLNIALLGNVMMDNGNKENRLGILSILLCQKWLGFSAFSFSFSSLLLMLVIDMGEHVAMATWHCSSPMASLQLLCLLFINKELVVGLAIKCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGLAIKYLYQGGQTDMVAVDIAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAIYDTGVQINDVAKESCPPWQCGKKKKKRFKLDRRVKMAWFFTFLLFFIVSSANACDRCIFQSKAAHYYEDTPTSYGGACGYENLALEMSRGYFAAAVPSLYRQGMGCGACYQVRCKNATLCNAMGTKVVLTDQNSDNRTDFVLSKKAFSAMALKGKGQELLKTGMVDIEYKRIPCEYNKNLLIQVVEWSHKPYYLAIKFLYQGGQTDITAVNIAAQDGSGEWQYMKRNYGAIWDTNKVPEGAIKLVVIVVSGYKNGRGIMMSYALPSDWKNGEIYDTGIQIKDIASEACNPWQCAKLMAWFLDSLFLFFISSANACDRCVYQSKASHLYDSPTTYGGACGYGNVALQFSNGFFAAAVPSLYRQGAGCGACYQVRCKNRRLCNTVGAKVVLTDQNNDNVTDLVLSKRAFFTMALNGKGADLVPCEYKYKNLLVQVEEASYNPFYLAIKFLYQGGQTDIVAVDIAQVGTSDWSHMNRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPTNWKSGAIYDTGVQIKDIAKESCPPWQCGDNLWK 1350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3639270 3680509 - ClCG02G003630.1 Cla02g00380 266506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00380 1350 SUPERFAMILY PHL pollen allergen 727 806 IPR036749 -
Cla02g00380 1350 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 725 807 IPR007117 -
Cla02g00380 1350 Gene3D - 1230 1332 IPR036749 -
Cla02g00380 1350 Gene3D - 980 1085 IPR036749 -
Cla02g00380 1350 Gene3D - 336 379 IPR036749 -
Cla02g00380 1350 Gene3D - 718 812 IPR036749 -
Cla02g00380 1350 Gene3D - 232 335 IPR036908 -
Cla02g00380 1350 Gene3D - 11 133 IPR036908 -
Cla02g00380 1350 Gene3D - 852 979 IPR036908 -
Cla02g00380 1350 Gene3D - 1114 1229 IPR036908 -
Cla02g00380 1350 Gene3D - 380 492 IPR036908 -
Cla02g00380 1350 SUPERFAMILY Barwin-like endoglucanases 251 339 IPR036908 -
Cla02g00380 1350 Gene3D - 134 231 IPR036749 -
Cla02g00380 1350 Gene3D - 493 580 IPR036749 -
Cla02g00380 1350 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 511 576 IPR007117 -
Cla02g00380 1350 PRINTS Expansin/Lol pI family signature 878 896 IPR007118 GO:0005576
Cla02g00380 1350 PRINTS Expansin/Lol pI family signature 1025 1039 IPR007118 GO:0005576
Cla02g00380 1350 PRINTS Expansin/Lol pI family signature 966 982 IPR007118 GO:0005576
Cla02g00380 1350 PRINTS Expansin/Lol pI family signature 900 918 IPR007118 GO:0005576
Cla02g00380 1350 PRINTS Expansin/Lol pI family signature 1066 1080 IPR007118 GO:0005576
Cla02g00380 1350 SUPERFAMILY Barwin-like endoglucanases 1111 1227 IPR036908 -
Cla02g00380 1350 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 1245 1327 IPR007117 -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 7 253 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 727 825 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 1107 1345 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 844 1098 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 350 391 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 389 578 - -
Cla02g00380 1350 SMART dpbb_1 1157 1228 IPR007112 -
Cla02g00380 1350 SMART dpbb_1 897 973 IPR007112 -
Cla02g00380 1350 SMART dpbb_1 411 487 IPR007112 -
Cla02g00380 1350 SUPERFAMILY Barwin-like endoglucanases 9 137 IPR036908 -
Cla02g00380 1350 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 138 IPR007112 -
Cla02g00380 1350 SUPERFAMILY Barwin-like endoglucanases 388 496 IPR036908 -
Cla02g00380 1350 Pfam Lytic transglycolase 1158 1220 IPR009009 -
Cla02g00380 1350 Pfam Lytic transglycolase 412 487 IPR009009 -
Cla02g00380 1350 Pfam Lytic transglycolase 898 970 IPR009009 -
Cla02g00380 1350 Pfam Expansin C-terminal domain 142 210 IPR007117 -
Cla02g00380 1350 Pfam Expansin C-terminal domain 1235 1316 IPR007117 -
Cla02g00380 1350 Pfam Expansin C-terminal domain 992 1055 IPR007117 -
Cla02g00380 1350 Pfam Expansin C-terminal domain 727 796 IPR007117 -
Cla02g00380 1350 Pfam Expansin C-terminal domain 507 569 IPR007117 -
Cla02g00380 1350 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 879 983 IPR007112 -
Cla02g00380 1350 SUPERFAMILY Barwin-like endoglucanases 674 727 IPR036908 -
Cla02g00380 1350 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 152 236 IPR007117 -
Cla02g00380 1350 PANTHER EXPANSIN-B3 254 349 - -
Cla02g00380 1350 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 255 340 IPR007112 -
Cla02g00380 1350 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 996 1080 IPR007117 -
Cla02g00380 1350 SUPERFAMILY Barwin-like endoglucanases 848 982 IPR036908 -
Cla02g00380 1350 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 393 497 IPR007112 -
Cla02g00380 1350 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1139 1229 IPR007112 -
Cla02g00380 1350 SUPERFAMILY PHL pollen allergen 504 577 IPR036749 -
Cla02g00380 1350 SUPERFAMILY PHL pollen allergen 989 1079 IPR036749 -
Cla02g00380 1350 PANTHER EXPANSIN-B3 7 253 - -
Cla02g00380 1350 PANTHER EXPANSIN-B3 350 391 - -
Cla02g00380 1350 PANTHER EXPANSIN-B3 1107 1345 - -
Cla02g00380 1350 PANTHER EXPANSIN-B3 727 825 - -
Cla02g00380 1350 PANTHER EXPANSIN-B3 389 578 - -
Cla02g00380 1350 PANTHER EXPANSIN-B3 844 1098 - -
Cla02g00380 1350 PANTHER EXPANSIN-B3 674 726 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 254 349 - -
Cla02g00380 1350 PANTHER EXPANSIN-LIKE A1-RELATED 674 726 - -
Cla02g00380 1350 SUPERFAMILY PHL pollen allergen 138 235 IPR036749 -
Cla02g00380 1350 SUPERFAMILY PHL pollen allergen 1231 1326 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00380 Cla-Chr2:3639270 Cla03g01181 Cla-Chr3:24987389 1.17E-29 dispersed
Cla02g00379 Cla-Chr2:3631958 Cla02g00380 Cla-Chr2:3639270 8.97E-31 tandem
Cla02g00380 Cla-Chr2:3639270 Cla02g00381 Cla-Chr2:3685389 4.70E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00380 - - csv:101207054 499.975