Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00381 ATGGCTTTGTTTGTTTGCCTTCTCCTTTTCCTCCTCACCCCATTTGCTATTGCTTGTGATCGTTGTGTTCACCAATCCAAAGCTGCCTATTTCTCAAATGATTCACCACTTTCATCTGGCGCTTGTGGCTATGGCTCCTTAGCTATTAGCTTGCTTGACGGACACCTCGCTTCGGGTGTTCCTTCCCTTTACAAAGAGGGTGTTCGTTGTGGTGCATGTTATCAGATAAGGTGCAAGGACAAGAAACTTTGCAGCAGAAGAGGGACCAAAGTAATTTTGACTGATCACAATATACACAACAATGGAACTGATTTTATTTTGAGTAAGGAAGCTTTCTCTGGCATGGCTCAGAAGGCCCATCAAAAGAATATTTTGAGACATGGGACTCTTGACATTGAGTACAAAAGGATGCCTTGTGAATACAAAAAACAAAATTTGTCAGTACGAATTGAAGAATCAAGCCAAAAGCCCCATCACATGGCTCTTAAGTTCTTATTCCAAGGTGGGCAAACAGATATAGTTTTGGTTCATCTTCATCCGGTGAATCGGGTTAGAACGGCGTTCATGAGCAGAAGACATGGGACCGCGGTGTGGGAAATCGACACGATGCCGGAAGCGGCGGTGATGTTTCAAATAAGGGTGATTTCGGGATTCGACGGGATGTGGATTAGGGCGGAGCGGGCGGTTCCGGCGGACTGGAAGCCGGGGATGATCTACGACCTTGGAGTTCAGATAGACGCCATTGCCAAAGGACAAGAGAGCTGCAGAGAGTGCGATGAAGGGCATTGCTTCTTTGTTCTCTTTATCTCTTTTGTTAATGCTTGCGATCAATGCATTCATCAATCTAAAGAGGCTTATTACTATAGTGATGCACCTATTACATATGGGGCATGTGGCTATGGTTCTTTGGCAAATGAATCTTTCCATGGATACATTGCTGGTGCGGTGCCTTTGCTATACAAACAAGGAGCTGGTTGTGGTGCTTGCTTTCAAGTGAGGTGCAAGAACAAGAAGCTGTGCAGTCCAATAGGAGCTAAAATAGTTTTGACAGATCAAAATTATGATAACCGAACTGATTTTGTTCTTAGTAGGAAAGCTTTCTCAGAAATGGCTCGATGGGGCAAGGCCCAAGATCTTTTGAAACTTGGAATGGTTGATATTGAATACAAGATGGTACCATGCGGATACAAAAACAAAAATTTGTTGGTGAGAATAGAAGAATGGAGCAACAAGCCTTACTACTTGGCCATGAAATTCCTTTACCAAGGTGGCCAGACAGAAATAAAAGCAATTGACATTGCTCAAGTTGGTTCTTCAGATTGGGAAGCTTTGAAGAGAAACTATGGAGCTATTTGGGATACAAGTAAAGTACCTGAAGGAGCATTGCAACTAAGAATTGTGGTAGCTTCAGGATATGATAATGAGAATTGGATTTGGACAAATTATGAAATTCCTGCTGATTGGAAAAATGGAGAAACTTATGATACAGGGATTCAAATCGAAGATATTGCCAAAGAATTTTGTTCCCCAAGAGAGTGTGGTGATAGAATATGGAAATGA 1560 42.44 MALFVCLLLFLLTPFAIACDRCVHQSKAAYFSNDSPLSSGACGYGSLAISLLDGHLASGVPSLYKEGVRCGACYQIRCKDKKLCSRRGTKVILTDHNIHNNGTDFILSKEAFSGMAQKAHQKNILRHGTLDIEYKRMPCEYKKQNLSVRIEESSQKPHHMALKFLFQGGQTDIVLVHLHPVNRVRTAFMSRRHGTAVWEIDTMPEAAVMFQIRVISGFDGMWIRAERAVPADWKPGMIYDLGVQIDAIAKGQESCRECDEGHCFFVLFISFVNACDQCIHQSKEAYYYSDAPITYGACGYGSLANESFHGYIAGAVPLLYKQGAGCGACFQVRCKNKKLCSPIGAKIVLTDQNYDNRTDFVLSRKAFSEMARWGKAQDLLKLGMVDIEYKMVPCGYKNKNLLVRIEEWSNKPYYLAMKFLYQGGQTEIKAIDIAQVGSSDWEALKRNYGAIWDTSKVPEGALQLRIVVASGYDNENWIWTNYEIPADWKNGETYDTGIQIEDIAKEFCSPRECGDRIWK 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3685389 3693162 - ClCG02G003640.2 Cla02g00381 266507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00381 519 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 413 496 IPR007117 -
Cla02g00381 519 Gene3D - 270 394 IPR036908 -
Cla02g00381 519 Gene3D - 17 140 IPR036908 -
Cla02g00381 519 SUPERFAMILY Barwin-like endoglucanases 263 398 IPR036908 -
Cla02g00381 519 SMART dpbb_1 312 389 IPR007112 -
Cla02g00381 519 SMART dpbb_1 57 134 IPR007112 -
Cla02g00381 519 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Cla02g00381 519 Pfam Expansin C-terminal domain 403 471 IPR007117 -
Cla02g00381 519 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 144 IPR007112 -
Cla02g00381 519 PANTHER EXPANSIN-B3 5 260 - -
Cla02g00381 519 PANTHER EXPANSIN-B3 264 511 - -
Cla02g00381 519 SUPERFAMILY PHL pollen allergen 145 240 IPR036749 -
Cla02g00381 519 PANTHER EXPANSIN-LIKE A1-RELATED 5 260 - -
Cla02g00381 519 PANTHER EXPANSIN-LIKE A1-RELATED 264 511 - -
Cla02g00381 519 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 241 IPR007117 -
Cla02g00381 519 Gene3D - 396 500 IPR036749 -
Cla02g00381 519 Gene3D - 141 245 IPR036749 -
Cla02g00381 519 Pfam Lytic transglycolase 57 134 IPR009009 -
Cla02g00381 519 Pfam Lytic transglycolase 318 389 IPR009009 -
Cla02g00381 519 SUPERFAMILY PHL pollen allergen 399 495 IPR036749 -
Cla02g00381 519 PRINTS Expansin/Lol pI family signature 316 334 IPR007118 GO:0005576
Cla02g00381 519 PRINTS Expansin/Lol pI family signature 294 312 IPR007118 GO:0005576
Cla02g00381 519 PRINTS Expansin/Lol pI family signature 482 496 IPR007118 GO:0005576
Cla02g00381 519 PRINTS Expansin/Lol pI family signature 382 398 IPR007118 GO:0005576
Cla02g00381 519 PRINTS Expansin/Lol pI family signature 441 455 IPR007118 GO:0005576
Cla02g00381 519 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 295 399 IPR007112 -
Cla02g00381 519 SUPERFAMILY Barwin-like endoglucanases 7 142 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00379 Cla-Chr2:3631958 Cla02g00381 Cla-Chr2:3685389 6.57E-78 dispersed
Cla02g00381 Cla-Chr2:3685389 Cla03g01181 Cla-Chr3:24987389 2.30E-77 dispersed
Cla02g00380 Cla-Chr2:3639270 Cla02g00381 Cla-Chr2:3685389 4.70E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00381 - - cmo:103490398 497.664