Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00399 ATGGCGGACGGAGATGGCAGCGTGGGAAGCCTCGATCTCCTGCCTTCTGCTGTCCTTGCTACCATCATGACTAAGCTCGATTTGCCTTCCATTTGCTCCGTTGCCTCCACATGCAGGACCTTCCATTCCTGTGCTTCTCAAATTCTCAATTTTCTCCCCAGTTTTCATCTCCTTGAAATTTCTCCAACAGTGGAATTTCTGAGGCCTCTGCTGCCTCCAAATCCTTTCCTGAGAAGCCTAAAGGTAGACTGTGGTCAGCTTGATGATTCAGCTATCCAGCTTCTACTCAAGCCTTCCTTGCACGAACTCTGTCTCCATAATTGCGCTGATTTCAGTGGGAAATTGCTTTCTGAGATCGGAGGGTGCTGCAAGGATTTAAGGTCCCTCTATTTGAGTTCAGTTGCTGAAAAAAGAGGTCGGGCAATTCATATTTCGGATCTAGAAGAGTTACTAAGTGGTTGCACACAGTTGGAAGTATTAACCTTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAATTTTGCTCGAGTCTGGGCTATGGCTTCAGAAAAACTAACTTCTCTGGAGATTGGCTGTATCTATTCTGTTACAGTCACCGAAATGCTCAGCCAAAATTTGGGTATTGGTAATTCTATGAATCGGATCAGTCCATCTATGTGGCCTAACATTGAAAAGTTGTGCCTTTCAGTCGACTACATAACTGATGCAATGGTTGGTGCAATATCAAAAGGTCTTATCTCCTTGACTCATTTGGAACTCCAAGATGCCCCCATCATTGAACCAAGATTTTCTTTTGACCTAACCAACGTTGGCCTTCAACAAATCAATCAGCTGTCAAAATTGAAGCATCTCTCTTTGGTACGAAGTCAGGAATTTCTTATAACTTATTTTAGAAGAGTAAACGATCTTGGGATCCTCTTAATGGCTGAGGGATGTGCTGACCTGGAAAGCATCTGTCTTGGAGGCTTTTGTCGTGTTACAGACACAGGTTTCCGGACAATTCTGCATACGTTCTCTAATTTAAACAAGCTTAGGGTGTTTCATGGAATCCAATTAACCCATCTAGTTTTCCATGACATCTCTGCTACTTCCCTTTCCTTGGAACATGTTAGCTTAAGATGGTGCAGTCTTCTAACAAACGATGCCGTCAAAAACTTATCATTGAACAAGGATCTAAGTTATCTTGACTTGAGAGATTGCAGAAGCCTTCGGGATGAAGCGCTTCAAGCTATCGGAACTATTCCAAAACTGAAAACATTGCTTTTGGACGGGTCCGATATTAGTGATGCAGGATTGTCTCACTTAAGACCCTTGATTATGAGCTCACTAGTCTCCTTGTCTGTTAGAAGTTGCAAGAAGCTTACAGATAAATCCATCACTGTCCTGTTTGATGGCTTATCTAAAATAGAACTACATGTATTAGATCTATCCAACCTTCCTTACCTATCTGATGCTGCAGTTTTACAACTGACCAGAAGCAAGTTTGCGATATCTGAACTCCGAATGCGTCAATGTCCGCTCATTGGTGATGTCTCGGTCATGGCATTAGCCTCAATGCAGGTCAATGAAGACCAACGACATGGGAGTAGCCTACGGCTGTTGGATTTGTACAACTGCGGTGGCCTTACACAGCTCTCATTCAAGTGGTTAAAGAATCCATACTTTCCAAGGTTGAGATGGTTGGGTGTGACGGGAAGTCTACATCGCGATTTGGTAGATGCTTTATCCAGAAGTAGACCATTCTTGCACGTAGCATGTCACGGTGAGGAGTTGGGAGCCAACCATTGGGGTAGCTCAGACAGTCTCTATTTATACCACTATGACGAGGTGGATGAATTTGAACAGTGGCTATTTGATGGTGAGGTCGAGATCGAGGACGACGACGATGACAACAATATGGCAGATGCTGAGAATGATGCCGAGCTAATTCTATAA 1935 43.46 MADGDGSVGSLDLLPSAVLATIMTKLDLPSICSVASTCRTFHSCASQILNFLPSFHLLEISPTVEFLRPLLPPNPFLRSLKVDCGQLDDSAIQLLLKPSLHELCLHNCADFSGKLLSEIGGCCKDLRSLYLSSVAEKRGRAIHISDLEELLSGCTQLEVLTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTVTEMLSQNLGIGNSMNRISPSMWPNIEKLCLSVDYITDAMVGAISKGLISLTHLELQDAPIIEPRFSFDLTNVGLQQINQLSKLKHLSLVRSQEFLITYFRRVNDLGILLMAEGCADLESICLGGFCRVTDTGFRTILHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLEHVSLRWCSLLTNDAVKNLSLNKDLSYLDLRDCRSLRDEALQAIGTIPKLKTLLLDGSDISDAGLSHLRPLIMSSLVSLSVRSCKKLTDKSITVLFDGLSKIELHVLDLSNLPYLSDAAVLQLTRSKFAISELRMRQCPLIGDVSVMALASMQVNEDQRHGSSLRLLDLYNCGGLTQLSFKWLKNPYFPRLRWLGVTGSLHRDLVDALSRSRPFLHVACHGEELGANHWGSSDSLYLYHYDEVDEFEQWLFDGEVEIEDDDDDNNMADAENDAELIL 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3864321 3867824 + ClCG02G003820.2 Cla02g00399 266525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00399 644 SUPERFAMILY F-box domain 7 47 IPR036047 GO:0005515
Cla02g00399 644 Gene3D Ribonuclease Inhibitor 39 439 IPR032675 -
Cla02g00399 644 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 14 563 - -
Cla02g00399 644 PANTHER UNCHARACTERIZED 14 563 - -
Cla02g00399 644 Pfam Leucine Rich repeat 389 411 IPR001611 GO:0005515
Cla02g00399 644 Pfam F-box domain 12 47 IPR001810 GO:0005515
Cla02g00399 644 Gene3D Ribonuclease Inhibitor 440 601 IPR032675 -
Cla02g00399 644 SMART LRR_CC_2 364 389 IPR006553 -
Cla02g00399 644 SMART LRR_CC_2 494 519 IPR006553 -
Cla02g00399 644 SMART LRR_CC_2 440 465 IPR006553 -
Cla02g00399 644 SMART LRR_CC_2 312 337 IPR006553 -
Cla02g00399 644 SMART LRR_CC_2 390 414 IPR006553 -
Cla02g00399 644 SMART LRR_CC_2 97 122 IPR006553 -
Cla02g00399 644 SMART LRR_CC_2 468 493 IPR006553 -
Cla02g00399 644 SUPERFAMILY RNI-like 304 565 - -
Cla02g00399 644 SUPERFAMILY RNI-like 48 345 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00399 - - - csv:101213291 1194.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00399 Cla-Chr2:3864321 Cla09g02121 Cla-Chr9:38814028 1.33E-65 dispersed
Cla02g00399 Cla-Chr2:3864321 Cla08g01334 Cla-Chr8:26203630 2.17E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00399 Cla_Chr02 FPKM 10.911458 8.979571 35.919624 33.354385 19.90416 11.701833 24.028662 33.109333 46.072712 49.267239