Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00400 ATGGTTATGGAGGATAACGAGAGCTGTGGGAGTAGAGCGTACGACTCGTTGTCGCCGGCGCAGAGTCGGCAACAGAGGCAGAAGTTTGAGGTCTACAATGAGGTTCTACGGCGTTTGAAGGATTCAAACAACGGAGAGGCTATGCAGCCTGGTTTCGATGACGAACTATGGGTTCACTTCAATCGTCTTCCCACTCGATATGCTCTAGACGTAAATGTGGAGAGGGCAGAAGATGTTCTCATGCATAAAAGATTATTGCAATTTGCTCACGATCCGGCAAATCGACCTGCAATTGAAGTCCGCCTAGTGCAGGTCCAAGCCATTTCTGATGAGCATTCTGCTGAATTTGCTGATTCATGTTCTGTAAAAGACACTGATCATAATTCTGCAAATTTCGTGGGCAGACAGAGCATACATCCACCACCTGCCTTCGGGTCATCTCCTAACCTTGAGGCCTTGGCCCTTGAAGCTAATAACGCTCAGGATCTGGAGGTTGATCAGTCTGTACATGCCAGAACACAGTTTTTCCGGCCTATGCATGAAATCACCTTCTCTACGGATGATAAGCCGAAACTTCTTAGTCAGTTGACTTCCTTGCTTGCGGAGATTGGGCTGAACATCCAGGAGGCACATGCATTTTCCACGGTTGACGGTTTCTCATTGGATGTTTTTGTAGTTGATGGTTGGCCCTATGAGGAAACAGAGCGATTGAAGAGTGCATTAGAGAAGGAAGTCTTACAGGTTGAGAATCGGGTTTGGCCAAATCGTAAATCCTCGTCTCCTGTGGGGGAACTCGATATAACAACTAAATGTGAGCTTGATCGGGTGGAAATACCAACAGATGGGACTGATGTATGGGAAATTAATCCTAGACATTTGAAGTTTGAGCATAAAGTTGCATCTGGTTCATATGGGGATCTGTATAAAGGTACATACTGCAGTCAGGAAGTGGCTATTAAAGTTCTCAAAACTGAACGTGTAAATACAGATATGCAAAGTGAGTTTGCCCAGGAAGTATATATTATGAGAAAAGTAAGGCATAAGAATGTCGTACAGTTTATAGGTGCATGCACGAAGCCCCCAAGCTTGTGCATTGTAACAGAATTTATGTCTGGTGGTAGTGTCTATGACTATCTACATAAACAAAAGGGAACTTTTAGGCTTCCATCTTTGCTCAAGGTGGCCATTGATGTTTCCAAGGGAATGAACTATTTGCACCAAAATAATATAATTCACAGAGATCTAAAGGCTGCCAATCTTCTGATGGATGAAAATGAAACCATTGAGCCACCCTATGATGTGGTGTTACATATTGTCTGTATTCAGAAGCTTGATTATTGTAATGGGTTTATACAAAAAAGATTTTTGGTGCATTTAGTTGCGTGTGCATATTGTATAATGTTACTCTATCTCCTATATGATCCAGAATATGGGCATCTCTCTCACACCCACCTTGCGCTGCAGGTTGTCAAGGTTGCTGATTTCGGTGTTGCCAGGGTAAAAGCTCAATCAGGAGTTATGACTGCAGAAACTGGGACATATCGGTGGATGGCTCCTGAGCTACCTTATGAATTCCTAACACCATTACAAGCCGCAGTCGGAGTGGTACAAAAGGGTTTACGGCCTACTATTCCTAAGCACACTAATCCCAAGCTGGCTGAGTTGCTAGAAAAATGTTGGCAGCAAGATCCAACATGCAGGCCTGACTTCTGTGAAATTATCGATATATTGTTGCAGATAAGTAAGGAAGTAGCTGAAGACGGCGACGAACGACGAAAGGAGAAGAGTGGAGGATTATTTTCGGTGTTGAGACGAAACCATCACTAA 1827 43.68 MVMEDNESCGSRAYDSLSPAQSRQQRQKFEVYNEVLRRLKDSNNGEAMQPGFDDELWVHFNRLPTRYALDVNVERAEDVLMHKRLLQFAHDPANRPAIEVRLVQVQAISDEHSAEFADSCSVKDTDHNSANFVGRQSIHPPPAFGSSPNLEALALEANNAQDLEVDQSVHARTQFFRPMHEITFSTDDKPKLLSQLTSLLAEIGLNIQEAHAFSTVDGFSLDVFVVDGWPYEETERLKSALEKEVLQVENRVWPNRKSSSPVGELDITTKCELDRVEIPTDGTDVWEINPRHLKFEHKVASGSYGDLYKGTYCSQEVAIKVLKTERVNTDMQSEFAQEVYIMRKVRHKNVVQFIGACTKPPSLCIVTEFMSGGSVYDYLHKQKGTFRLPSLLKVAIDVSKGMNYLHQNNIIHRDLKAANLLMDENETIEPPYDVVLHIVCIQKLDYCNGFIQKRFLVHLVACAYCIMLLYLLYDPEYGHLSHTHLALQVVKVADFGVARVKAQSGVMTAETGTYRWMAPELPYEFLTPLQAAVGVVQKGLRPTIPKHTNPKLAELLEKCWQQDPTCRPDFCEIIDILLQISKEVAEDGDERRKEKSGGLFSVLRRNHH 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3896275 3906736 + ClCG02G003830.2 Cla02g00400 266526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00400 608 CDD ACT_TyrKc 179 246 - -
Cla02g00400 608 Gene3D Phosphorylase Kinase; domain 1 283 366 - -
Cla02g00400 608 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672|GO:0006468
Cla02g00400 608 Pfam Protein tyrosine and serine/threonine kinase 293 428 IPR001245 GO:0004672|GO:0006468
Cla02g00400 608 Pfam Protein tyrosine and serine/threonine kinase 530 576 IPR001245 GO:0004672|GO:0006468
Cla02g00400 608 SMART serkin_6 293 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00400 608 CDD STKc_MAP3K-like 299 577 - -
Cla02g00400 608 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 16 427 - -
Cla02g00400 608 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 521 590 - -
Cla02g00400 608 ProSiteProfiles ACT domain profile. 181 259 IPR002912 -
Cla02g00400 608 Gene3D Transferase(Phosphotransferase) domain 1 367 522 - -
Cla02g00400 608 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 16 427 - -
Cla02g00400 608 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 488 520 - -
Cla02g00400 608 ProSiteProfiles Protein kinase domain profile. 293 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla02g00400 608 Coils Coil 231 251 - -
Cla02g00400 608 MobiDBLite consensus disorder prediction 1 26 - -
Cla02g00400 608 PANTHER SERINE/THREONINE-PROTEIN KINASE STY46-LIKE ISOFORM X1 488 520 - -
Cla02g00400 608 SUPERFAMILY ACT-like 179 248 IPR045865 -
Cla02g00400 608 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 521 590 - -
Cla02g00400 608 Gene3D Transferase(Phosphotransferase) domain 1 523 598 - -
Cla02g00400 608 MobiDBLite consensus disorder prediction 11 26 - -
Cla02g00400 608 SUPERFAMILY Protein kinase-like (PK-like) 283 581 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00400 Cla-Chr2:3896275 Cla10g00044 Cla-Chr10:506616 0 dispersed
Cla02g00400 Cla-Chr2:3896275 Cla01g01294 Cla-Chr1:26249281 1.21E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80330 PF07714 PK_Tyr_Ser-Thr 2.00E-37 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00400 - - csv:101213048 957.592