Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla02g00401 | ATGGATACGCTTAAGAACTCCTTCAAAGGTAATGTATCTTTCAAGCATACCAGGAAGATTTCTGCTGGCGTAGCTGGTAGCGAAATTAATCACGAGGAGCTCCCCATTCTTCTCAATCGCGAACCTACGGGTCATCGTCGCCGTCTTAGGGATCGTCATCCGGTGAACGATTCTGATCCATCTGACCGAACAGAGGTCATTCTCAAGATCGACGATGGCGGTTCTTCGGCTGTTTCCAGACATCAGGACCCTGCCGGCAATAATGGCGGGAAGGTTTGGCGGGAATCCAGGTGCGATTTCTGGAACAATGATGCAATTGGAATTGGGGAAAGTGCGAGTAGGGTTAGTGGTGTTGATAGAAATGAGGGATTTGAATTTGTACAGCCTGGTTATGGTATGGAGGATCCACCAACGAAGCTGATTGGTGAGTTTCTTCATAAGCAGAAAATTGGGGGAGAAACGACTTTGGATATGGATTTAGAAATGGAGGAGTTGAGGCCTGATAGGATTATACCTCCATTGGCAGAATCGCCGTTGAGTCAGACTTCTAAGGATCTTAAAGTTTCATTCCAGCAGGATTCGACAGAAATTTCGAGCAATGATCAGTCGATGAGAAGGCGGTATAGAGATTCTCGCGATTTTCAGGAAGAGTATAAAGGAGGACAACCGCCACGGCAGCAATCGCATCATGAACGTCTTGGATCTCCGACTATCTCTGGGGTTCAGAATGAGTCTGTTGCTGAGGCTATGAGGTGCGCATCTAACTTGTCTTTTCATAGTGAGCTTTCGTTTCAAAGGAAATCTCATTTGCTTAGGGCGAAAACCAAGTCAAGATTGATAGACCCGCCGGCAGAGCCAGACCGGCTCTCTGGCCTTATTCCTAAATCAGGACAACTACGATCTGGGTTTCTCGGCAAGATTGACGACGACGATGACGATCCCTTTCTGGAGGAGGACCTTCCAGACGAATTTAAAAGGGGAAATTTCAATGCTCTAACTGTGCTGCAATGGGTCAGTTTGATTTTAATCACCGCGGCTTTAGTTTGCACTCTTTCTATTCCTTATTTGAGGGAAAAGAGCCTATGGGAGTTGGATATATGGAAATGGGAGGTAATGATTTTGATTCTGATTTGTGGACGATTGGTATCTGGTTGGGGGATTAGGATCGTAGTATTTTTCATTGAGAGGAATTTTCTTTTGCGTAAAAGGGTTCTGTATTTTGTATATGGGGTTAGAAAGCCAGTGCAGAATTGTCTATGGTTAGGCCTTGTTCTGATCGCTTGGCATTTGTTGTTCAATAGGCGGGTTGAGAAACAAACCAACACTAGTATACTCAATTATGTGAGGAGAGTTTTAGTGTGTCTCTTGATAAGCACATTGATATGGCTTGTGAAAACCTTGATGGTGAAGGTGCTTGCATCTTCTTTCCATGTAAGCACATACTTCGATCGAATTCAAGAATCGTTGTTTAACCAATATGTCATTGAGACGCTCTCAGGGCCACCCCTTATTGAAATACGGAAGAATGAGGAAGAAGATGAGAGGATTGCAGATGAAGTCCAAAAATTACAGAATGCTGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCGCTTCTGTAAAGAGTGGAAGGGTAATAGGTAGTGGACGGACTCACAAAAGTTTTTGTGCAAAAAGTACAAAATTTTCTCGAGCACTTACCAAAAATGGGAACGATGGAATAACGATTGACCACTTGCACAAACTAAGTCCGAAGAATGTGTCTGCTTGGAATATGAAGAGGTTGTTGAACATAGTTCGATATGGTAGTATTTCCACACTGGATGAGCAGATACCGGGGCCATATCTTGATGATGAATCTACTACAGAGATCAAAAGTGAACGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCAGAACGTGGCTCGGCGTGGATATAAGTACATATACCTGGATGACTTAATGCGGTTCATGAGAGAAGATGAGGTTTTCAAAACGATGAGTCTCTTTGAAGGAGCAACTGAAAACCGGAGGATAAGCAAATCTGCTTTGAAAAATTGGGTGGTCAATGCCTTCAGAGAACGAAGAGCCCTTGCTTTAACACTGAATGATACCAAAACAGCTGTGGATAAACTGCACCATATGGTGAATGTCATATTCGGCATCCTTATATTAATTTTATGGCTTATAGTTCTAGGAATTGCCTCCAGCAAATTTTTCGTCTTCATTAGTTCTCAAATAGTGGTCGTGGCATTTATTTTTGGAAACACTTGCAAAACCATATTTGAAGCAATCATCTTTTTGTTTGTCATGCATCCATTTGACGTTGGAGATCGCTGTGAAATCGATGGAACGCAGATGATTGTAGAGGAAATGAACATCTTGACTACTGTATTCTTGAGATATGACAACTTGAAGATTATAATCCCAAATAGTGTTCTTGCAACCAAATTAATCTACAACTTCTACCGTAGTCCTGAAATGGGCGAATCGGTTGAATTCTCTGTCCATATAGCTACTCCAGCTGAGAAAATTACAGCCATGAAACAGAGAATCATAAGTTACATTGAAGGCAACAAAGAACATTGGTGTCCTTCCCCTATGATTGTGTTCAAGGATATCGATGGTTTAAATATGCTCAAATTGGCAGTTTGGTTGTCACACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCATCTTGGTCGAAGAAGTCGTTAAAATCTGTCAAGAGCTCGACATTCAATACCGTCTATTGCCCATCGATATCAATATCCGTTCACTGTCTTCTTCTGCACCCTTCATTGGCTTTCCATCTAATTGGACTTCCTCTGCAAATAAGTTTTTTCCTGTTATCCATTGTAGAGATTCTCCAATCATCATTCCGACGAGAAGACAAAGACCAAAACACAATGAATCGCCGACGACCGAGAAAGGAGAAGGTAGAGAAATGAGGAAGTGGATTGTATATTAG | 2991 | 42.56 | MDTLKNSFKGNVSFKHTRKISAGVAGSEINHEELPILLNREPTGHRRRLRDRHPVNDSDPSDRTEVILKIDDGGSSAVSRHQDPAGNNGGKVWRESRCDFWNNDAIGIGESASRVSGVDRNEGFEFVQPGYGMEDPPTKLIGEFLHKQKIGGETTLDMDLEMEELRPDRIIPPLAESPLSQTSKDLKVSFQQDSTEISSNDQSMRRRYRDSRDFQEEYKGGQPPRQQSHHERLGSPTISGVQNESVAEAMRCASNLSFHSELSFQRKSHLLRAKTKSRLIDPPAEPDRLSGLIPKSGQLRSGFLGKIDDDDDDPFLEEDLPDEFKRGNFNALTVLQWVSLILITAALVCTLSIPYLREKSLWELDIWKWEVMILILICGRLVSGWGIRIVVFFIERNFLLRKRVLYFVYGVRKPVQNCLWLGLVLIAWHLLFNRRVEKQTNTSILNYVRRVLVCLLISTLIWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLIEIRKNEEEDERIADEVQKLQNAGINIPPDLKAATFASVKSGRVIGSGRTHKSFCAKSTKFSRALTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPYLDDESTTEIKSEREAKAAAKKIFQNVARRGYKYIYLDDLMRFMREDEVFKTMSLFEGATENRRISKSALKNWVVNAFRERRALALTLNDTKTAVDKLHHMVNVIFGILILILWLIVLGIASSKFFVFISSQIVVVAFIFGNTCKTIFEAIIFLFVMHPFDVGDRCEIDGTQMIVEEMNILTTVFLRYDNLKIIIPNSVLATKLIYNFYRSPEMGESVEFSVHIATPAEKITAMKQRIISYIEGNKEHWCPSPMIVFKDIDGLNMLKLAVWLSHRMNHQDSGERWARRSILVEEVVKICQELDIQYRLLPIDINIRSLSSSAPFIGFPSNWTSSANKFFPVIHCRDSPIIIPTRRQRPKHNESPTTEKGEGREMRKWIVY | 996 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3909002 | 3913127 | + | ClCG02G003840.1 | Cla02g00401 | 266527 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla02g00401 | 996 | Gene3D | - | 775 | 824 | IPR023408 | - | |
Cla02g00401 | 996 | MobiDBLite | consensus disorder prediction | 173 | 239 | - | - | |
Cla02g00401 | 996 | MobiDBLite | consensus disorder prediction | 970 | 989 | - | - | |
Cla02g00401 | 996 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 111 | 934 | IPR016688 | - | |
Cla02g00401 | 996 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 111 | 934 | - | - | |
Cla02g00401 | 996 | PIRSF | Memb_At2g17000 | 52 | 993 | IPR016688 | - | |
Cla02g00401 | 996 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 3 | 114 | IPR016688 | - | |
Cla02g00401 | 996 | Pfam | Mechanosensitive ion channel | 717 | 921 | IPR006685 | GO:0016020|GO:0055085 | |
Cla02g00401 | 996 | SUPERFAMILY | Sm-like ribonucleoproteins | 765 | 824 | IPR010920 | - | |
Cla02g00401 | 996 | Coils | Coil | 506 | 526 | - | - | |
Cla02g00401 | 996 | MobiDBLite | consensus disorder prediction | 200 | 226 | - | - | |
Cla02g00401 | 996 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN | 3 | 114 | - | - | |
Cla02g00401 | 996 | MobiDBLite | consensus disorder prediction | 176 | 199 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla02g00401 | Cla-Chr2:3909002 | Cla03g01465 | Cla-Chr3:30176717 | 9.79E-177 | dispersed | |
Cla02g00401 | Cla-Chr2:3909002 | Cla02g01085 | Cla-Chr2:22994722 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla02g00401 | K22048 | - | csv:101207426 | 1674.45 |