Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00403 ATGCCCAATTTGGTGATGATTCGCCGGAGAATTTGGTCTACGAAGATCTTTCGTGCAGCTGCTTTAACAATCTTCAATGCTCAGCAGCATCTTCATCGTCGTCCAATTCAATTCGACAATGCTTTTCAGTTGAAACAGAGATGTTTCTCTTCTTCCTCGAGAGCCAACAGTTATCAGGTTCCGAAATTCCATTCTCTGAACAAGAAGATGACTAATTTGATTCAAGCAGGCCGAATAAGTGAAGCGAGGGAACTGTTCGATGGCATTGAGCATCGGAATACGATCACTTGGAATACGATGATCGCTGGTTATGTAAAAAGGAGAGAGATGTCGAAAGCACGCCAGTTGTTCGACGAAATGCCTAACAGAAGCATTGTGTCATGGAACTTAATGTTATCAGGTTATATATCTTGCGGTGGAAGGTACCTTGAGAGGGGACGGAATATGTTCGATGAAATGCCAGAAAGAGATTGTGTTTCATGGAACACGATGTTGAGTGGGTATGCTAAGAATGGGATGATGGATAAAGCAGAAGAGCTTTTCAATTACATGCCTGAGCGTAATATTGTCTCGTGGAATGCGATGGTTTCTGGTTATTTAATGAATGGTTATGTGGAGAAAGCTATTGAGTTCTTTAAGATGATGCCAGAACGAGACTCTACTTCTCTTAGTGCACTGGTTTCTGGTCTGATTCAGAATGACAAGTTGGTTGAAGCCGAAAGGATTCTGCTTCAATATGGTGGGAATGATGGTAGAGGGGATTTAGTTCATGCTTATAATACTTTGATCGCTGGATATGGTCGGAAAGGAATGACCCATGAAGCCCGGAAATTGTTTGATCGCATCCCTTTGGGTCGTGATGGAAAGGAAGATGAATGTGGAAACTCTGGGAGGAATGTGGTTTCATGGAACTCTATGATAATGAGCTATGTGAGAGCTGGTGACATAGTCTCTGCTCGAGAACTATTCGATAAAATGGTTGAGCGAGATACTTTTTCATGGAACACTATGATCAGTGGCTATGTTCAGATCTTGGATATGAAAGAGGCTTCAAATCTTTTCGGTAGAATGCCGGAACCCGATACCCTTTCTTGGAATATGATGATATCTGGGTTTGCTGAGATAGGTAATTTGAAACTAGCTCATGACTTGTTCAAGAGGATGCCAGCGAAAAGCCTTGTCTCATGGAATTCCATGATATCTAGCTGTGAGAAAAATGAAGACTATAAAGGTGCAATTAACATCTTTTTGCAGATGCAACTTGAAGGTAAAAAACCAGATAGGCACACTTTATCATCAATTCTAAGTGCTTGTGCTGGATTGGTAGATCTGGCTTCGGGAACTCAGATTCATCAACTAGTTACAAAAGCCTTTATTCCAGATTTGCCCGTAAACAACTCTCTTGTTACAATGTATTCAAGATGTGGAGCAATCGTCGAGGCACGGACCATTTTTGATGAAATGAAATTGCAGAGAGATGTCATTTCTTGGAATGCAATGATTGGCGGGTATGCCTCTCATGGCTTTGCAACAGAGGCCCTTCAACTTTTTGAATTGATGAAACAATGCAATGTGCAGCCCACTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTCATGCTGGATTGATTGAGGAAGGTAGGAGAGAATTCAACTCCATGGTTAACACGCACGGTATCAAGCCACGAGTTGAACACTATGCTGCCCTCGTCGACATCATTGGCCGAAATGGCCAACTTGAAGAAGCAGTGAGTTTGATCAATAGCATGCCATGTGAACCAGATAAAGCAGTATGGGGTGCATTACTGGGTGCTTGTAGGTTGCACAACAATGTTGAGATGGCTCGAGCAGTGGCAGAAGTGTTAATGAAGCTCGAACCTGAAAGCTCAGCTCCTTTTGTGCTGCTGTATAATATGTATGCTGAAGTGGGACGATGGGATGATGCTGCCGAAATATTTGATTGGCTTCCAATGCTTGGAAAGAATAATTTGATAAACGCTACAATAATCATAATCAGAACACTACTATCGGCCACATTGTTCAGCCTCCTTAAACAATTTCTTGACAAAGCCGATCAATATAATCCTGTGAGCGACTCCGATGCTCTTTTGCTTCTACTTAAAGCGGTGAACGGCGAATTTCAGTTGTTCACAGGGCAAATCAAAACACAAAATCCTTGCGATGGCGATGGCCTTCTTCTTCCTCGATCGTCTCTTTTTCCTCGTTATCTGATCAGACTGTGGGATTCTTCTTATTTATCTCTTTTTGAAACTTGTTTGGATTCAATAATGAACAAGAGGGCCAGAATTGATGATTCCAATAAGGCAGTGGTCAATGTCTGGAAGCGGGAGGTTGGCGAGCTTTCCACTAGGAATTTTGCCCACCGTCTTGGTGCGTTGGAGGATCTCGTGCTCCGACTTGATCTTTACAGGAAATTGGAGAGGCACAAAGGTTGTGTGAACACCGTGAGCTTTAATGCTGCTGGTGACATTTTAGTGTCAGGCTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAACCGGGCATGTTAAGCTCTCTTTTCAGTCTGGTCACAATAACAATGTTTTTCAAGCTAAAATCATGCCTTACACAGATGACAGAAGCCTTGTGACTTGTGCTGCGGATGGGCAGATTTACACACCGGAACTGCCTTATATTGACTATCCTTTATTGAGGCCTTTGACAAGGCAGTGGCTTTCCAAATGTTCTTTTGCAGGTGACCTCGTGAGACATGCTCAGATTCTGAATAGTGGGCGTGTGGAAACTGCACTACTTGGCAATCATCTAGGGCGAGCTCATAAGTTGGCCATTGAACCTGGTAGCCCTTATATGTTTTATACTTGTGGTGAAGATGGATTGGTTCAACGTTTTGATCTAAGAACTGGGGCTGCCGTTGAGCTGTTCACTTGCCAGTCAGTTGACAATAGGGCAGGTTACATGTCATCGATTCAGCTTAATGCAATTGCTATTGATCCCAGAAATCCGAATCTCTTTGTTGTTGCTGGTTCAGATGAGTACGCGCGCTTGTATGATATTCGCAAGTCTGGGGAGGATGGATCAACTGATTTTGGTCAACTGGTAGACTGCTATTGCCCATCTCACTTGATTGGCGATGAGCAAGTGGGAATAACAGGCCTAGCGTTCTCAGAGCTGAGTGAGCTCCTTGTATCGTACAATGATGAATCCATTTATCTCTTCAATAGGGATATGGGTCTAGGCCCAAACCCAAATCCAGCGTCTCCGGTATCTCTGAGTAGTGATACAATTGAAATGGGAGCTGAAAATGTTGAGAATGGCAATCCCCAAGTTTATAAAGGACATAGAAACTGTGAGACAGTGAAAGGTGTCAATTTTTTTGGACCTAAATGTGAGTATGTTGTCAGTGGTTCTGATTGTGGCAGAATATTTATATGGAGGAAAAAGGGTGGAGAGCTAATCCGAGTCATGGAAGCTGACGAGGATGTCGTGAACTGCATCGAGCCCCATCCTCATATGACCATGCTTGCTAGTAGTGGAATTGAAAGTGACGTCAAGATATGGACTCCAAAGGCCCTTGAAAGGGCTACTCTCCCTGAGAAAATTGAACAGGTAGGAACGTTATCTTTATTCTTCAGTTTAATACCAATTCTAATGCTTTACAATAGCTTATTGAATGGCATTGGACTCTTTGCATCATTGAGGTTTCTGTCGTATATATCGAATAAAACATCCTTTCCAGCCGGAAGGATCACAGCACCTGCCATTTCGTATTCTTGA 3783 42.88 MPNLVMIRRRIWSTKIFRAAALTIFNAQQHLHRRPIQFDNAFQLKQRCFSSSSRANSYQVPKFHSLNKKMTNLIQAGRISEARELFDGIEHRNTITWNTMIAGYVKRREMSKARQLFDEMPNRSIVSWNLMLSGYISCGGRYLERGRNMFDEMPERDCVSWNTMLSGYAKNGMMDKAEELFNYMPERNIVSWNAMVSGYLMNGYVEKAIEFFKMMPERDSTSLSALVSGLIQNDKLVEAERILLQYGGNDGRGDLVHAYNTLIAGYGRKGMTHEARKLFDRIPLGRDGKEDECGNSGRNVVSWNSMIMSYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASNLFGRMPEPDTLSWNMMISGFAEIGNLKLAHDLFKRMPAKSLVSWNSMISSCEKNEDYKGAINIFLQMQLEGKKPDRHTLSSILSACAGLVDLASGTQIHQLVTKAFIPDLPVNNSLVTMYSRCGAIVEARTIFDEMKLQRDVISWNAMIGGYASHGFATEALQLFELMKQCNVQPTYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPRVEHYAALVDIIGRNGQLEEAVSLINSMPCEPDKAVWGALLGACRLHNNVEMARAVAEVLMKLEPESSAPFVLLYNMYAEVGRWDDAAEIFDWLPMLGKNNLINATIIIIRTLLSATLFSLLKQFLDKADQYNPVSDSDALLLLLKAVNGEFQLFTGQIKTQNPCDGDGLLLPRSSLFPRYLIRLWDSSYLSLFETCLDSIMNKRARIDDSNKAVVNVWKREVGELSTRNFAHRLGALEDLVLRLDLYRKLERHKGCVNTVSFNAAGDILVSGSDDRRVILWNWETGHVKLSFQSGHNNNVFQAKIMPYTDDRSLVTCAADGQIYTPELPYIDYPLLRPLTRQWLSKCSFAGDLVRHAQILNSGRVETALLGNHLGRAHKLAIEPGSPYMFYTCGEDGLVQRFDLRTGAAVELFTCQSVDNRAGYMSSIQLNAIAIDPRNPNLFVVAGSDEYARLYDIRKSGEDGSTDFGQLVDCYCPSHLIGDEQVGITGLAFSELSELLVSYNDESIYLFNRDMGLGPNPNPASPVSLSSDTIEMGAENVENGNPQVYKGHRNCETVKGVNFFGPKCEYVVSGSDCGRIFIWRKKGGELIRVMEADEDVVNCIEPHPHMTMLASSGIESDVKIWTPKALERATLPEKIEQVGTLSLFFSLIPILMLYNSLLNGIGLFASLRFLSYISNKTSFPAGRITAPAISYS 1260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3932167 3942493 + ClCG02G003860.2 Cla02g00403 266529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00403 1260 Gene3D Tetratricopeptide repeat domain 141 241 IPR011990 GO:0005515
Cla02g00403 1260 Gene3D Tetratricopeptide repeat domain 345 453 IPR011990 GO:0005515
Cla02g00403 1260 Gene3D Tetratricopeptide repeat domain 242 343 IPR011990 GO:0005515
Cla02g00403 1260 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Cla02g00403 1260 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Cla02g00403 1260 SUPERFAMILY TPR-like 291 643 IPR011990 GO:0005515
Cla02g00403 1260 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 814 846 - -
Cla02g00403 1260 PANTHER OS07G0578800 PROTEIN-RELATED 63 654 IPR045215 GO:0003723|GO:0009451
Cla02g00403 1260 Pfam E motif 610 653 IPR046848 -
Cla02g00403 1260 Pfam WD domain, G-beta repeat 812 846 IPR001680 GO:0005515
Cla02g00403 1260 SUPERFAMILY TPR-like 168 661 IPR011990 GO:0005515
Cla02g00403 1260 Pfam PPR repeat 159 189 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 568 592 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 332 358 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 364 391 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 258 282 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 301 329 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 190 218 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat 466 489 IPR002885 -
Cla02g00403 1260 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Cla02g00403 1260 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 157 191 IPR002885 -
Cla02g00403 1260 Gene3D Tetratricopeptide repeat domain 454 558 IPR011990 GO:0005515
Cla02g00403 1260 Gene3D Tetratricopeptide repeat domain 559 695 IPR011990 GO:0005515
Cla02g00403 1260 Gene3D Tetratricopeptide repeat domain 23 140 IPR011990 GO:0005515
Cla02g00403 1260 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 258 281 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 364 392 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 95 126 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 495 528 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 301 330 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 159 190 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 190 219 IPR002885 -
Cla02g00403 1260 TIGRFAM PPR: pentatricopeptide repeat domain 394 427 IPR002885 -
Cla02g00403 1260 SMART WD40_4 1151 1190 IPR001680 GO:0005515
Cla02g00403 1260 SMART WD40_4 849 889 IPR001680 GO:0005515
Cla02g00403 1260 SMART WD40_4 1106 1148 IPR001680 GO:0005515
Cla02g00403 1260 SMART WD40_4 807 846 IPR001680 GO:0005515
Cla02g00403 1260 SMART WD40_4 1037 1076 IPR001680 GO:0005515
Cla02g00403 1260 SMART WD40_4 978 1020 IPR001680 GO:0005515
Cla02g00403 1260 SMART WD40_4 927 967 IPR001680 GO:0005515
Cla02g00403 1260 Gene3D - 803 1192 IPR015943 GO:0005515
Cla02g00403 1260 PANTHER OS06G0228900 PROTEIN 63 654 - -
Cla02g00403 1260 ProSiteProfiles Trp-Asp (WD) repeats profile. 814 855 IPR001680 GO:0005515
Cla02g00403 1260 SUPERFAMILY WD40 repeat-like 806 1189 IPR036322 GO:0005515
Cla02g00403 1260 Pfam PPR repeat family 92 125 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat family 492 540 IPR002885 -
Cla02g00403 1260 Pfam PPR repeat family 392 439 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00403 - - - bhj:120077123 1176.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00403 Cla-Chr2:3932167 Cla06g01428 Cla-Chr6:27860660 1.60E-10 dispersed
Cla02g02030 Cla-Chr2:35331524 Cla02g00403 Cla-Chr2:3932167 6.60E-28 dispersed
Cla02g00403 Cla-Chr2:3932167 Cla04g00612 Cla-Chr4:20304962 9.16E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00403 Cla_Chr02 FPKM 39.118923 44.696335 24.492186 23.265366 32.746208 31.498222 33.152039 24.963326 23.766357 23.671467