Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00410 ATGTTATCGGAGTTGATGAACTTTTTGAGGGCCTGTTTCCAGCCGAGCTCCGATCGGTATGTGGCCGGGGAAATCAGGGGGCAGCAGGATGGGCTGTTATGGTACAAAGATAGTGGACAACACTTGAATGGAGAGTTTTCAATGTCTGTGATTCAGGCCAACAATTTGCTTGAAGATCAGAGCCAGATTGAGTCTGGCAGTTTGAGCTTACACGAGTCTGGCCCCAAAGGAACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCTGAGACTTCTCGGTATATCTGTGATCATCTATTCCAGCATCTCAAGAGATTTACTTCTGAGCAAGATCTAATGTCTGCGGATGTAATACGCAAGGCGTTCCAAGCGACAGAAGAGGGGTTTTTTTCAATAGTTCGAAGTCAATGGTCAACAAATCCTCAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATCTGTGATGGGACTCTCTATGTTGCAAATCTAGGTGATTCTCGTGCTGTTTTGGGTAGAGTAGTGAAGGCAACTGGCGAGGTTCTAGCCATTCAGTTGTCAACAGAACACAATGTTTCTAACGAGTCAGTGAGGCAAGAGCTGCAGTCTTTGCACCCTGATGACTCACAAGTTGTGGTTTTAAGGCATAATGTTTGGCGAGTAAAGGGCATAATACAGGTTAGTTACTTGCCTTCAACTCCAAACATTGTGATTGCTCCTGGAAATGCCTTAGAGTTGCTAGTCATTTGCATTGAATGGTATCAGGCATCAGCTTCTCCATTGTTAGCCAGACAGGTCTTTTCTTATTTTTCTGTTTCGGTTGCATTTTGGAAATATAAATTAGCTCTGGAGACAAATGGATTGGCTATTTTTATCATTGAACGCTATACACTAGCTTTACTATTACAGATTTCCAGATCCATAGGCGATGTGTACTTGAAAAAAGCTGAGTTCAATAAAGAACCATTGTATGCAAAGTTTCGAGTTCAAAAACCCTTCAAAAAGCCATTTTTGAGCTCTGAACCAGCCATTTCTGAGATCCAGTTGAAGCCAGATGATCAATTTGTTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAATCAGGAAGCAGTCGATATAGTTCATAGCCACTCTCAAAATGGAAGTGCAAGAAGACTGGTCAGAGCTGCTCTTCAAGTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGATTTGAAGAAGATTGGCCGTGGCGTTCGTCGCCATTTCCACGACGACATCACTGTGGTGGTTGTGTTTCTTGATACCAATATGCTCTTCAGAGCCAGCTCCACGAAGAGCTTGAGTGTCTCACTACGAGGCGGTGGAGTCAACCGGCTTCCTAACTCTTTATCCCCCGTCACTACGCCCGTGTAG 1404 44.09 MLSELMNFLRACFQPSSDRYVAGEIRGQQDGLLWYKDSGQHLNGEFSMSVIQANNLLEDQSQIESGSLSLHESGPKGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDLMSADVIRKAFQATEEGFFSIVRSQWSTNPQIAAVGSCCLVGVICDGTLYVANLGDSRAVLGRVVKATGEVLAIQLSTEHNVSNESVRQELQSLHPDDSQVVVLRHNVWRVKGIIQVSYLPSTPNIVIAPGNALELLVICIEWYQASASPLLARQVFSYFSVSVAFWKYKLALETNGLAIFIIERYTLALLLQISRSIGDVYLKKAEFNKEPLYAKFRVQKPFKKPFLSSEPAISEIQLKPDDQFVIFASDGLWEHLSNQEAVDIVHSHSQNGSARRLVRAALQVAAKKREMRYSDLKKIGRGVRRHFHDDITVVVVFLDTNMLFRASSTKSLSVSLRGGGVNRLPNSLSPVTTPV 467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4009353 4014768 - ClCG02G003940.2 Cla02g00410 266536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00410 467 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Cla02g00410 467 Gene3D - 34 438 IPR036457 -
Cla02g00410 467 SUPERFAMILY PP2C-like 302 431 IPR036457 -
Cla02g00410 467 CDD PP2Cc 46 430 IPR001932 -
Cla02g00410 467 ProSiteProfiles PPM-type phosphatase domain profile. 42 430 IPR001932 -
Cla02g00410 467 PANTHER ALPHABET, ISOFORM E-RELATED 5 229 - -
Cla02g00410 467 PANTHER ALPHABET, ISOFORM E-RELATED 301 457 - -
Cla02g00410 467 SMART PP2C_4 37 428 IPR001932 -
Cla02g00410 467 Pfam Protein phosphatase 2C 72 397 IPR001932 -
Cla02g00410 467 SUPERFAMILY PP2C-like 49 251 IPR036457 -
Cla02g00410 467 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 301 457 - -
Cla02g00410 467 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 229 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00410 Cla02g01181 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00410 Cla-Chr2:4009353 Cla02g01350 Cla-Chr2:27751689 1.53E-125 dispersed
Cla02g00410 Cla-Chr2:4009353 Cla02g01181 Cla-Chr2:25301031 5.69E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00410 - K01102 mus:103998823 569.696