Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00412 ATGGATTTTGACGAGTATGAATATTTAGAGAAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGTGATGCAGATATGAAGTCTGGAGATAAACATCGTAGTCGAAGTTCAAAGTATAAGAGTGACAGTAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAATCAGAAGATGAGTCACGTGATCAAGTTCGACATAGGGATAGGACTTCTTCCCGGCATCGTTCTAGGTCCAGAGAGAGAGACCGTGATAGGCATAGAAGCAGTAAGGAAAACAGGGGAAAGGAGGACAGAGAAGGGAATCAGGAAGAGAGAAGCAGTAAGGACAGGGATGACAGAGATAAAGAACGTTCTCATGATCGTGATAGACGGGGTGGAGATGGCGAGAGGAATAGGGAAAGAGAACAGTCACGTCGAAGTAGAAGTCGGTCAGAAAGACATCGCAGTGATCGGGATGAAGGCATAAGAGAGAGGAGCCGAGACAATGAACTCAGAGAAAGAGAAAAGGAGAGAGAGTCTAGAGAGCGAGGCAGAGATGGCAGTATGTATGAGCCATTTTACAGCCTAATTGCTTCGAGGAATAAACTTACGGATTTGACTCATTGGGCAGCTGTGAATTCCCATGGTGATACAGGTGTCCTAACAACACGATATAAAGAGAAAAAGGAAGAAGCAGCTGAACCAGAGGCTGATCCTGAGAGGGATCAGAGGACTGTATTTGCCTATCAGGTAAATATAAGTTTAAAGGCAACTGAAAGAGATGTGTATGAATTTTTCTCCAGGGCTGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCAAGACGTTCTAAAGGCGTTGGGTATGTTGAATTTGTGGATGCAATGTCTGTGCCCATGGCTATAGCACTTTCTGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAAAACCAGGTTCAATCAACTTCTGCTGCTGGTGGACCGGGTGGAGTAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATACGTTGGCAATCTGCACCCCAACATAACTGAAGATAACCTTCGTCAGGTTTTTGGAGCTTTTGGCACTGTAGAACTGGTTCAGATGCCCCTTGATGAATCTGGCCATTGCAAGGGTTTTGGTTTTATTCAGTTCTCACGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAACGATAAAGGTGATGCATATTCATCATGTATCCACAGTCACAGATCAGCCTGGTTTGCAAGATATTGGAGCAAGTACAGGAGACCTTGATGATGAAGATGGCGGTGGCTTGGTAAATAAGTCTTCTGTCTTTGTTCCTCTCCCATCCTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGGACTGGCGCCGCATCTAGCATTGCTGGTTCTTTAGGTACACATGTCGTAAATAGCCTAGGCGCTACTATGCCAATGGCGCCGATCCTTGGAGGTGCAACTATCCCATCCCTCGCTGTTGGTAATTCTTTGGCCTCCCTTCCCGGTTTTCCCGGACTTGGTGCAGGCATTCAGGTTCCCACCGTTGCTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACTATTGAAGAATATGTTTGATCCTACAGCTGAGTCGGAACCAACTTTCGATCTGGATATCAGAGATGACGTTGAAGAGGAATGCTCTAGGTTCGGGAAATTGAAACATATATATGTTGACAAGAATAGCGCCGGTTTTGTATATTTGAGATTTGAAAAACCAGAGTCTGCAATGGAAGCCCAACGTGCTCTTAATGGAAGATGCCCAAGCATCAGGTCTGCCAGGAAATTCTGCGTTTCCAATGCTCATCGTCAAATGGTTTGTCCTTTTCCATCCAAACGAATATTTATATAA 1959 45.38 MDFDEYEYLEKTVENPEGQKVKETANGGDADMKSGDKHRSRSSKYKSDSKDDGEHRSKRSKSEDESRDQVRHRDRTSSRHRSRSRERDRDRHRSSKENRGKEDREGNQEERSSKDRDDRDKERSHDRDRRGGDGERNREREQSRRSRSRSERHRSDRDEGIRERSRDNELREREKERESRERGRDGSMYEPFYSLIASRNKLTDLTHWAAVNSHGDTGVLTTRYKEKKEEAAEPEADPERDQRTVFAYQVNISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDAMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGPGGVMGPYSGGARRLYVGNLHPNITEDNLRQVFGAFGTVELVQMPLDESGHCKGFGFIQFSRLEDARNALSLNGQLEIAGRTIKVMHIHHVSTVTDQPGLQDIGASTGDLDDEDGGGLVNKSSVFVPLPSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNSLGATMPMAPILGGATIPSLAVGNSLASLPGFPGLGAGIQVPTVAANLLGVGTPSECLLLKNMFDPTAESEPTFDLDIRDDVEEECSRFGKLKHIYVDKNSAGFVYLRFEKPESAMEAQRALNGRCPSIRSARKFCVSNAHRQMVCPFPSKRIFI 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4050062 4064065 + ClCG02G003960.2 Cla02g00412 266538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00412 652 CDD RRM3_RBM39_like 552 622 - -
Cla02g00412 652 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 627 - -
Cla02g00412 652 PANTHER CC1-LIKE SPLICING FACTOR 1 627 - -
Cla02g00412 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 553 639 IPR000504 GO:0003723
Cla02g00412 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 348 425 IPR000504 GO:0003723
Cla02g00412 652 Gene3D - 236 330 IPR012677 -
Cla02g00412 652 Gene3D - 331 426 IPR012677 -
Cla02g00412 652 CDD RRM1_RBM39_like 244 318 - -
Cla02g00412 652 SUPERFAMILY RNA-binding domain, RBD 251 346 IPR035979 GO:0003676
Cla02g00412 652 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 465 571 IPR029123 -
Cla02g00412 652 SUPERFAMILY RNA-binding domain, RBD 346 425 IPR035979 GO:0003676
Cla02g00412 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 313 IPR000504 GO:0003723
Cla02g00412 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 350 419 IPR000504 GO:0003723
Cla02g00412 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 577 622 IPR000504 GO:0003723
Cla02g00412 652 TIGRFAM SF-CC1: splicing factor, CC1-like family 136 623 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cla02g00412 652 Gene3D - 549 632 IPR012677 -
Cla02g00412 652 SUPERFAMILY RNA-binding domain, RBD 550 622 IPR035979 GO:0003676
Cla02g00412 652 SMART rrm1_1 349 421 IPR000504 GO:0003723
Cla02g00412 652 SMART rrm1_1 244 318 IPR000504 GO:0003723
Cla02g00412 652 SMART rrm1_1 554 627 IPR000504 GO:0003723
Cla02g00412 652 MobiDBLite consensus disorder prediction 1 186 - -
Cla02g00412 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 322 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00412 K13091 RBM23_39; RNA-binding protein 23/39 - csv:101209872 846.654
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01545 Cla-Chr1:30088497 Cla02g00412 Cla-Chr2:4050062 1.15E-140 dispersed
Cla02g00412 Cla-Chr2:4050062 Cla03g00448 Cla-Chr3:5064536 4.05E-12 dispersed
Cla10g01135 Cla-Chr10:25846632 Cla02g00412 Cla-Chr2:4050062 3.92E-06 dispersed
Cla02g00412 Cla-Chr2:4050062 Cla02g00613 Cla-Chr2:6731074 3.06E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00412 Cla_Chr02 FPKM 0.984475 0.954192 1.252447 1.501986 1.172911 1.335024 1.221623 3.106472 3.291527 3.498232