Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00415 ATGACGCAAGACACTGAGATGAAGGAGCTTCCTGCTCCCATTTCTTCTTCTGCTGCTCCAACTTCTCCTTCAACTTTACAACATTTGAAAGAGATTGTCTCGCTTCTTGAAACCGGTGCATATGCCCGGGAAGTCCGGCGAATTGTTCGAGCTATTCGTCTGACTATGGCGTTGAGACGGAAGTTGAAGGCGTCTGTTCTTTCTTCATTCCTGAATTTTGCTCTCCCGCCAGGATCCGATTTGCACTCAAGATTATCCTCATTTATTCCGAAGGAGGATGACTACGAAATGGATGTTGACTCGGCAACACAGGCACCTGCAAAACACCCCTTACCCGAGATAGAGATTTTCTGCTATTTGGTTTTGCTAATATTTCTGATTGATCAGAAGAAATATGATGAGGCTAAGGCTTGTGCTTCAGCAAGCATTGCCCGATTGAAGAACTTGAATAGGAGAACGGTTGATGTGCTAGCATCTAGGCTCTACTTCTATTACTCACTTAGCTACGAACTCACTGGTGATCTTGCTGAAATCAGAGGGAGAACGGTTGATGTGCTAGCATCTAGGCTCTACTTCTATTACTCACTTAGCTACGAACTCACTGGTGATCTTGCTGAAATCAGAGGGAGAACGGTTGATGTGCTAGCATCTAGGCTCTACTTCTATTACTCACTTAGCTACGAACTCACTGGTGATCTTGCTGAAATCAGAGGAACATTGATTGACAGTAACCTCCTAGCCCTGCATCGCATAGCAACCTTACGTCATGATGAATTGGGTCAGGAAACCCTCCTCAACCTACTACTTCGCAATTACCTCCATTACAATCTTTATGATCAAGCAGAGAAGTTGAGGTCCAAGGCACCCCGATTTGAAGCTCACTCGAACCAGCAGGCAATTGTTTGGAATGACTGCATAAGAAGAATTCAGGCATCATACTTACTTTTAGTGATGTACCTATTTTACCTGGGCAAGATCAGGACCATTCAGCTGGAATATACAGATGCAAAGGAGTCTCTTCTACAAGCTGCTCGGAAAGCACCTATTGCAGCTCTTGGTTTTCGAGTACAATGCAACAAATGGGCAATCATTGTTCGCTTGTTATTAGGAGAAATCCCTGAGAGGACTGTTTTCATGCAGAAAGGCATGGAGACAGCTCTGAGGCCATACTTTGAACTTACAAATGCTGTGAGAATTGGTGATTTGGAGCTTTTCAGAACTGTTGCTGAGAAGTTCTCTAGTACTTTCAGCTCAGATCGAACCAACAATTTGATCGTGAGGCTGCGACATAATGTAATTAGAACTGGGCTTCGCAACATTAGCATATCTTATTCACGCATTTCTCTGGCTGATGTTGCTAAAAAACTGAGACTCGACTCTGAAAATCCTATTGCTGATGCTGAGAGTATCGTCTCCAAGGCAATCCGAGATGGAGCAATCGATGCCACGGTTGATCACACGAATGGATGGATGGTATCCAAGGAGACCGGAGACATCTACTCTACCAATGAACCTCAAATTGCCTTCAACTCCAGGATTGCATTTTGCCTGAATATGCATAATGAGGCAGTTCGTGCTCTCAGGTTCCCACCAAACTCCCACAAAGAAAAAGAAAGTGCTGAGAAAAGGAGAGAAAGACAGCAGCAGGAGCAAGAACTTGCTAAGCATATAGCCGAAGAAGACGATGACGACTTTTAA 1698 44.23 MTQDTEMKELPAPISSSAAPTSPSTLQHLKEIVSLLETGAYAREVRRIVRAIRLTMALRRKLKASVLSSFLNFALPPGSDLHSRLSSFIPKEDDYEMDVDSATQAPAKHPLPEIEIFCYLVLLIFLIDQKKYDEAKACASASIARLKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGRTVDVLASRLYFYYSLSYELTGDLAEIRGRTVDVLASRLYFYYSLSYELTGDLAEIRGTLIDSNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQAIVWNDCIRRIQASYLLLVMYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMETALRPYFELTNAVRIGDLELFRTVAEKFSSTFSSDRTNNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLDSENPIADAESIVSKAIRDGAIDATVDHTNGWMVSKETGDIYSTNEPQIAFNSRIAFCLNMHNEAVRALRFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4086049 4089685 + ClCG02G003980.1 Cla02g00415 266541

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00415 565 SUPERFAMILY Winged helix DNA-binding domain 425 499 IPR036390 -
Cla02g00415 565 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 180 - -
Cla02g00415 565 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 210 565 - -
Cla02g00415 565 Coils Coil 532 559 - -
Cla02g00415 565 Pfam PCI domain 389 494 IPR000717 -
Cla02g00415 565 Gene3D - 287 515 - -
Cla02g00415 565 MobiDBLite consensus disorder prediction 1 23 - -
Cla02g00415 565 MobiDBLite consensus disorder prediction 529 565 - -
Cla02g00415 565 Pfam Proteasome regulatory subunit C-terminal 498 564 IPR013586 GO:0000502|GO:0030234|GO:0042176
Cla02g00415 565 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 1 180 - -
Cla02g00415 565 SMART PINT_4 423 516 IPR000717 -
Cla02g00415 565 MobiDBLite consensus disorder prediction 529 558 - -
Cla02g00415 565 ProSiteProfiles PCI domain profile. 317 498 IPR000717 -
Cla02g00415 565 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 423 516 - -
Cla02g00415 565 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 181 209 - -
Cla02g00415 565 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 181 209 - -
Cla02g00415 565 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 210 565 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00415 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - han:110925759 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00415 Cla-Chr2:4086049 Cla06g00040 Cla-Chr6:435332 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g179 . . . . . Bpe12g00127 . . Cmo19g00757 Cmo11g01750 . . . . . Cpe04g00602 Cpe15g00601 Bhi05g01695 Tan02g0667 . . Hepe02g0415 . . Cla02g00415 Cam02g0425 Cec02g0423 Cco02g0441 Clacu02g0426 Cmu02g0421 Cre02g0755 . . . . . Csa07g00112 . Cme01g01250 . Blo13g00498 Bda15g01028 . . . . Bma08g00613 . . . Cma11g01368 . . Car19g00576 . . . . . . . . . . . . . . . . . . Chy01g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00415 Cla_Chr02 FPKM 4.734043 5.722781 6.141023 6.055133 3.140832 2.496006 2.762254 4.447803 4.584127 6.944911