Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00420 ATGTCGAAAGAAGTGACGGAAGAGGGACAGTCCGGTCTGAGAAAGGACTACGTCGACCCCCCGCCGGCGCCGCTCATCGACGCCGCCGAACTCACTCTCTGGTCCTTCTACAGAGCCCTAATCGCTGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACAATCGCCACCGTCATCGGCAACAACAAACAAACCAAAATGTGCGACGGCGTCGGAATCCTCGGAATCGCCTGGGCCTTCGGCGGCATGATTTTCGTCCTCGTCTACTGCACCGCTGGAATCTCCGGTGGTCATATTAATCCGGCGGTGACATTCGGGCTGTTTCTCGCGAGGAAAGTGTCACTGATTAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCGTCGTCGGCGTTGGGTTGGTTAAGGCTTTTATGAAGCATGATTATAACAACAACGGCGGCGGAGCCAACGCCGTTAATTCTGGTTACAGTAGGGGAACAGCTCTTGGTGCTGAGATTATTGGAACTTTTGTTCTTGTTTACACTGTCTTCTCTGCTACTGATCCCAAGAGAAGCGCGCGTGATTCTCACATCCCTGTTTTGGCTCCATTGCCGATTGGCTTCGCCGTGTTCATGGTTCATTTGGCAACCATTCCCATCACCGGAACCGGAATCAACCCGGCCAGAAGCTTCGGCGCCGCCGTCATCTACAACCATGAAAAACCCTGGAACGACCACTGGATCTTTTGGGTCGGTCCGTTCGTCGGAGCTTTAGCGGCAGCGGCGTACCACCAGTACATTCTCCGGGCAGCCGCCATTAAAGCTTTGGGATCATTCCGCAGCAACCCCACAAACTGA 843 55.04 MSKEVTEEGQSGLRKDYVDPPPAPLIDAAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAVVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNHEKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4119110 4121077 - ClCG02G004030.1 Cla02g00420 266546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00420 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Cla02g00420 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cla02g00420 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cla02g00420 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cla02g00420 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cla02g00420 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cla02g00420 Cla02g01174 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00420 Cla-Chr2:4119110 Cla05g02143 Cla-Chr5:33021643 1.31E-158 dispersed
Cla07g00932 Cla-Chr7:25408662 Cla02g00420 Cla-Chr2:4119110 1.91E-118 transposed
Cla02g00420 Cla-Chr2:4119110 Cla02g01174 Cla-Chr2:25220123 3.40E-154 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00420 K09872 - csv:101209627 540.036