Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00422 ATGTCGTCGTCGAAGAAGATCGTTCTCAGGAGTTCCGACGGCGGAACCTTCGACGTCGACGAAATTGTCGCCGTCGAGTCTCAAACCATCAAGCACATGATCGAGGACGATTGCGCCGACACTGTTATCCCGTTGCCCAATGTCACCAGTGGCATTCTTTCCAAGGTAATTGAGTACTGTAAGAAGCATGTCGAGACCGATGATAAAGATCCTCAAGCCGTTTATGAAACTCTCAAAACCTGGGACGCTGAATTTGTCAAGGTTGATCAGAATACCCTCTTTGATCTCATCTTGGCTGCTAACTATCTGAACATCAAAAGCCTTTTGGATCTCACATGCCAGACTGTGGCTGACATGATCAAAGGAAAGACTCCAGAGGAAATTCGAAAGACGTTCAACATCAAGAATGATTTTACTCCAGAGGAGGAAGAGGAGGTTCGAAGGGAGAATCAATGGGCCTTCGAGTAA 468 46.58 MSSSKKIVLRSSDGGTFDVDEIVAVESQTIKHMIEDDCADTVIPLPNVTSGILSKVIEYCKKHVETDDKDPQAVYETLKTWDAEFVKVDQNTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 155
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4137253 4138777 - ClCG02G004050.1 Cla02g00422 266548

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00422 155 PIRSF SCF_Skp 1 155 IPR016897 GO:0006511
Cla02g00422 155 Pfam Skp1 family, tetramerisation domain 5 64 IPR016073 GO:0006511
Cla02g00422 155 Gene3D Potassium Channel Kv1.1; Chain A 1 155 IPR011333 -
Cla02g00422 155 SMART skp1_3 4 105 IPR001232 GO:0006511
Cla02g00422 155 CDD BTB_POZ_SKP1 6 120 - -
Cla02g00422 155 PANTHER SKP1 1 155 IPR016897 GO:0006511
Cla02g00422 155 SUPERFAMILY Skp1 dimerisation domain-like 78 153 IPR036296 GO:0006511
Cla02g00422 155 Pfam Skp1 family, dimerisation domain 106 153 IPR016072 GO:0006511
Cla02g00422 155 PANTHER PUTATIVE-RELATED 1 155 - -
Cla02g00422 155 SUPERFAMILY POZ domain 6 67 IPR011333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00422 K03094 SKP1, CBF3D; S-phase kinase-associated protein 1 - csv:101209382 288.885
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g00104 Cla-Chr1:918198 Cla02g00422 Cla-Chr2:4137253 7.24E-17 dispersed
Cla02g00422 Cla-Chr2:4137253 Cla10g00056 Cla-Chr10:606408 7.45E-81 dispersed
Cla02g00422 Cla-Chr2:4137253 Cla08g01401 Cla-Chr8:26917323 4.27E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g170 . . . . . . . . . Cmo11g01745 . . . . . Cpe04g00597 . . . . . . . . Cla02g00422 Cam02g0431 Cec02g0429 Cco02g0447 Clacu02g0432 Cmu02g0427 Cre02g0761 . . . . . . . Cme01g01256 Blo04g00571 . . Bda14g00619 Bpe15g00809 . Bma03g00612 . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01205 . Chy01g00676 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000912 2 2 2 2 2 3 4 3 3 2 3 3 3 3 3 3 3 2 5 3 2 3 3 3 2 3 3 4 3 4 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00422 Cla_Chr02 FPKM 30.994566 34.312893 19.391615 18.698801 32.260101 29.76594 31.98246 20.259054 21.616697 21.374983