Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00433 ATGGTCTATACCATACCCTTGAGTTTCAATGTACAAGATCTTGTAGCCCTAATGATTATAGACACTGATGTAATTAGATCTATTCTTCGTGAACAAACCAGAGATTTGCGATCCCTGGATCATGAAATTCGTCCACTTCTCGAAGAGGACACAACAAGATTGCAGCAAATGCTTCCTGAGATACCGCTGTGGGTGAAATGTCCAGACTATGATCGTGTTGACTGGCTTAACAGGTTTATTGAATATATGTGGCCCTATCTTGATAAGGCAATATGTAAAACAGCAAGAAATATTGCCAAACCTATAATTGCAGAGCAAATCCCCAAATTTAAGATTGATTCGGTTGAATTTGAAGCACTCACATTGGGATCCTTGCCACCGACTTTTCAAGGCATGAAAGTCTATGCTACAGATGAGAAGGAGCTGATAATGGAACCTTCAATAAAATGGGCTGGAAATCCAAATGTCTTGGTTGCAGCCAAGGCATTTGGGCTGAAAGCAACAGTTCAGATCCTAGATTTGCAAGTTTTCGCGGCTCCACGCATTACCTTGAAGCCATTGGTTCCGAGCTTTCCTTGCTTTGCAAACATCTTTGTCTCGCTCATGGAAAAGCCACACGTTGATTTTGGGCTAAAGCTTGTTGGGGCCGACTTAATGTCAATTCCAGGTCTCCACCAGTTTGTCCAGGAGACCATTAAAGATCAGGTTGGCAACATGTATCTGTGGCCTAAAACCTTGGATATAACAGTTATGGATCCATCAACAGCCCTAAGGAAGCCGGTCGGAATTCTAGATGTGAAGGTTTTAAGGGCAATGAGGCTGAAAAAGAAAGACCTTTTAGGTGCATCAGATCCTTATGTGAAACTTAAGCTTACTGAGGAAAATCTACCTTCTAAAAAGACCACTGTGAAACATAAGAATTTGAATCCTGAATGGAATGAGGAGTTCAGTTTGGTGGTCAAAGATCCAAATTCCCAAGTCATAGAGTTCCAAGTTTATGACTGGGAGCAGGTTGGAAAGCATGACAAGATGGGCATGAATCTAGTCCCTTTGAAAGATCTTCCTCCTGAAGAGTCAAAAGTCTTCACCCTTGATCTGCTGAAGAACATGGACATGAATGATGTTCAAAATGAGAAGAACAGGGGGCAGATTGTGGTTGAATTGACTTACAAACCATTTAAGGAAGATGAATTAGCTGCAGATTTGGATGATGCACAGAAAGTAAAGGACGCTCCAGAAGGAACGCCGGAAAATGGAGGTCTACTTGTGGTTATCGTTCACGAAGCTCAAGATGTTGAAGGCAAGCACCACAACAATCCATATGTGAGGCTTCTGTTCAAAGGGGAAGAGAAAAGAACTAAGCGTATGAAGAAGAACAGAGACCCTAGATGGGAAGAAGAGTTTGAATTTATGCTGGAAGAACCACCCACAGATGACAAATTATATGTGGAAGTTCTCAGTTCCTCATCAAGAATGGGCCTCTTGCATCCCAAGCCTCCTCCCATGGCGTTATCCGTCGTAGACACAGAGTACCTCAAAGAGATCGACAAGGCTCGCCGTGACCTCCGCGCTCTCATTGCCAATCGGAACTGCGCTCCCATCATGCTTCGTTTAGCTTGGCATGACGCTGGCACATACGATGTGACTACAAAAACTGGTGGGCCTAATGGATCGATTAGGAACGAGGAGGAGTTTTCTCATGGTTCTAATAATGGACTGAAAAAAGCTATTGATTTTTGTGAGGAAGTGAAGTCTAAACATCCGAAGATTACTTATGCAGACCTGTACCAGCTAGCTGGCGTTGTTGCTGTTGAGGTCACTGGAGGCCCCACCATTGACTTTGTTCCCGGTAGAAAGGATTCAAACATTTGTCCCAGGGAAGGCCGACTTCCTGATGCCAAAAAAGGTGCACCACATCTGCGTGACATCTTTTATAGGATGGGCCTGTCTGACAAGGATATTGTTGCATTGTCTGGGGGTCACACTTTGGGAAGAGCACATCCAGAGAGATCTGGTTTTGATGGACCTTGGACAGAGGACCCTCTGAAATTTGATAACTCATACTTTGTGGAACTGTTGAAAGGAGAATCAGAGGGACTATTAAAACTTCCTACGGACAAGGCTTTACTTGAAGATCCTGAGTTCCGCAAATATGTGGAATTGTATGCAAAAGTAAGGCTATCTGGTTCTTCGGAACTGATGATTATGATAAAGAATGAAGATGCATTCTTCAAAGATTATGCTGAATCACACAAGAAACTTTCAGAGCTAGGGTTCACTCCAGGTTCTGGCAGGGCAATTGTGAAGGACAGCACTGTATTGGCACAGGGTGCCGTTGGAGTTGCGGTTGCAGCTGCTGTGGTAATTCTGAGCTACTTATATGAAATTCGCAAAAAATTGAAGTAA 2406 43.43 MVYTIPLSFNVQDLVALMIIDTDVIRSILREQTRDLRSLDHEIRPLLEEDTTRLQQMLPEIPLWVKCPDYDRVDWLNRFIEYMWPYLDKAICKTARNIAKPIIAEQIPKFKIDSVEFEALTLGSLPPTFQGMKVYATDEKELIMEPSIKWAGNPNVLVAAKAFGLKATVQILDLQVFAAPRITLKPLVPSFPCFANIFVSLMEKPHVDFGLKLVGADLMSIPGLHQFVQETIKDQVGNMYLWPKTLDITVMDPSTALRKPVGILDVKVLRAMRLKKKDLLGASDPYVKLKLTEENLPSKKTTVKHKNLNPEWNEEFSLVVKDPNSQVIEFQVYDWEQVGKHDKMGMNLVPLKDLPPEESKVFTLDLLKNMDMNDVQNEKNRGQIVVELTYKPFKEDELAADLDDAQKVKDAPEGTPENGGLLVVIVHEAQDVEGKHHNNPYVRLLFKGEEKRTKRMKKNRDPRWEEEFEFMLEEPPTDDKLYVEVLSSSSRMGLLHPKPPPMALSVVDTEYLKEIDKARRDLRALIANRNCAPIMLRLAWHDAGTYDVTTKTGGPNGSIRNEEEFSHGSNNGLKKAIDFCEEVKSKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNICPREGRLPDAKKGAPHLRDIFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFVELLKGESEGLLKLPTDKALLEDPEFRKYVELYAKVRLSGSSELMIMIKNEDAFFKDYAESHKKLSELGFTPGSGRAIVKDSTVLAQGAVGVAVAAAVVILSYLYEIRKKLK 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4231990 4247046 + ClCG02G004170.2 Cla02g00433 266559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00433 801 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 69 251 IPR031468 GO:0008289
Cla02g00433 801 Gene3D C2 domain 258 417 IPR035892 -
Cla02g00433 801 SMART C2_3c 421 516 IPR000008 -
Cla02g00433 801 SMART C2_3c 263 363 IPR000008 -
Cla02g00433 801 Pfam Peroxidase 519 724 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 69 248 IPR039010 -
Cla02g00433 801 ProSiteProfiles C2 domain profile. 401 522 IPR000008 -
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 511 531 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 629 646 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 550 560 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 564 588 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 647 668 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 695 720 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 669 693 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 608 620 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 589 607 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Plant ascorbate peroxidase signature 532 547 IPR002207 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 Gene3D - 518 758 - -
Cla02g00433 801 ProSiteProfiles C2 domain profile. 242 364 IPR000008 -
Cla02g00433 801 ProSitePatterns Peroxidases active site signature. 532 543 IPR019794 GO:0004601
Cla02g00433 801 Gene3D C2 domain 421 493 IPR035892 -
Cla02g00433 801 Pfam C2 domain 262 358 IPR000008 -
Cla02g00433 801 Pfam C2 domain 421 490 IPR000008 -
Cla02g00433 801 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 39 540 IPR045050 GO:0008289
Cla02g00433 801 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 420 489 IPR035892 -
Cla02g00433 801 ProSiteProfiles Plant heme peroxidase family profile. 532 775 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Haem peroxidase superfamily signature 653 668 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Haem peroxidase superfamily signature 532 546 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Haem peroxidase superfamily signature 608 620 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Haem peroxidase superfamily signature 590 607 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 PRINTS Haem peroxidase superfamily signature 677 692 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cla02g00433 801 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 258 394 IPR035892 -
Cla02g00433 801 CDD ascorbate_peroxidase 510 761 - -
Cla02g00433 801 ProSitePatterns Peroxidases proximal heme-ligand signature. 653 663 IPR019793 -
Cla02g00433 801 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED 39 540 - -
Cla02g00433 801 CDD C2 264 366 - -
Cla02g00433 801 CDD C2 422 485 - -
Cla02g00433 801 Gene3D Peroxidase, domain 2 631 751 - -
Cla02g00433 801 PRINTS C2 domain signature 328 336 IPR000008 -
Cla02g00433 801 PRINTS C2 domain signature 279 291 IPR000008 -
Cla02g00433 801 PRINTS C2 domain signature 306 319 IPR000008 -
Cla02g00433 801 SUPERFAMILY Heme-dependent peroxidases 516 763 IPR010255 GO:0004601|GO:0006979|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00433 - - - csv:101207181 881.322
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00433 Cla02g01164 CCT
Cla02g01164 Cla02g00433 ECH
Cla02g00433 Cla02g01164 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00433 Cla-Chr2:4231990 Cla05g02150 Cla-Chr5:33111041 0 dispersed
Cla11g00305 Cla-Chr11:3549582 Cla02g00433 Cla-Chr2:4231990 1.59E-10 dispersed
Cla01g01992 Cla-Chr1:34574476 Cla02g00433 Cla-Chr2:4231990 6.75E-125 transposed
Cla02g02025 Cla-Chr2:35241248 Cla02g00433 Cla-Chr2:4231990 4.03E-100 transposed
Cla08g00603 Cla-Chr8:17949623 Cla02g00433 Cla-Chr2:4231990 2.21E-68 transposed
Cla08g01335 Cla-Chr8:26209263 Cla02g00433 Cla-Chr2:4231990 1.25E-35 transposed
Cla11g01395 Cla-Chr11:27481888 Cla02g00433 Cla-Chr2:4231990 5.33E-12 transposed
Cla02g00433 Cla-Chr2:4231990 Cla02g01164 Cla-Chr2:25035574 0 wgd
Cla02g00433 Cla-Chr2:4231990 Cla08g01413 Cla-Chr8:26999547 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g153 . . . . . . . . Cmo19g00743 . . Cma20g00755 . Car20g00656 Sed05g2221 . Cpe15g00588 Bhi05g01723 Tan02g0693 Cmetu01g1869 . Hepe02g0429 . . Cla02g00433 Cam02g0442 Cec02g0440 Cco02g0458 Clacu02g0443 Cmu02g0438 Cre02g0772 Cone12ag1230 Cone8ag1282 . . Lsi10g00492 Csa07g00094 Chy11g00259 Cme01g01268 Blo04g00565 . . Bda14g00614 Bpe15g00816 . Bma03g00606 . Sed01g0198 . Cmo20g00751 . Cma19g00735 . Car19g00564 Cpe16g00314 . Bhi10g01856 Tan05g1144 Cmetu11g0298 . Hepe08g0289 . . Cla02g01164 Cam02g1241 Cec02g1250 Cco02g1291 Clacu02g1223 Cmu02g1191 Cre02g1502 . Csa02g01388 . Cme11g00384
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000733 3 5 3 2 4 3 4 3 3 2 3 3 4 3 3 4 3 4 4 3 3 3 3 3 3 2 3 4 4 2 96
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00433 Cla_Chr02 FPKM 2.479397 2.700833 9.630233 12.571688 5.581995 4.026929 4.793724 6.469049 5.787148 6.848294