Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00437 ATGAGTGAAATCCCAAAAGTACCCTTGGCCGTTAGACTTCCGTCGCAAATCGCACGGCGAGTTGCTCCATTCCAAGGCAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCAGCATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAAAGAAGAGATCGAGAAATGGCTGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAAGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGAAGCCTCGGCGTTGGTGAGGATGTCGAGTTTCTGATCGAGGCTGAGTCCGATGGCCGTTCCAAGGCTGTTGATGTCACCGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGAGGTGGAGGAGGTGGTTACTCCAGCGGAGGAGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTATGGTGGTGGGGGTTATGGAGGAGGTGGTGGGGGCGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGCGGAGGCGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGGGAGTGTCCAAGCAGTGGTCGTTGA 891 56.9 MSEIPKVPLAVRLPSQIARRVAPFQGREAEEPWPSDLVGNHPPSLRIGRSASNNVTPQNHKWKKRRLRMTGRSSRFQAFRFTKRRDREMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGYSSGGGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGGGNCYSCGESGHFARECPSSGR 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4305437 4306459 - ClCG02G004220.2 Cla02g00437 266563

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00437 296 MobiDBLite consensus disorder prediction 25 59 - -
Cla02g00437 296 MobiDBLite consensus disorder prediction 150 177 - -
Cla02g00437 296 Gene3D - 85 169 IPR012340 -
Cla02g00437 296 ProSitePatterns Cold-shock (CSD) domain signature. 106 125 IPR019844 -
Cla02g00437 296 Pfam Zinc knuckle 277 293 IPR001878 GO:0003676|GO:0008270
Cla02g00437 296 Pfam Zinc knuckle 240 254 IPR001878 GO:0003676|GO:0008270
Cla02g00437 296 PRINTS Cold shock protein signature 95 110 IPR002059 GO:0003676
Cla02g00437 296 PRINTS Cold shock protein signature 116 125 IPR002059 GO:0003676
Cla02g00437 296 PRINTS Cold shock protein signature 131 149 IPR002059 GO:0003676
Cla02g00437 296 Gene3D - 273 296 - -
Cla02g00437 296 Gene3D - 236 265 - -
Cla02g00437 296 ProSiteProfiles Cold-shock (CSD) domain profile. 92 158 IPR002059 GO:0003676
Cla02g00437 296 SMART c2hcfinal6 277 293 IPR001878 GO:0003676|GO:0008270
Cla02g00437 296 SMART c2hcfinal6 240 256 IPR001878 GO:0003676|GO:0008270
Cla02g00437 296 CDD CSP_CDS 93 158 IPR002059 GO:0003676
Cla02g00437 296 PANTHER COLD SHOCK DOMAIN PROTEIN 2 89 296 - -
Cla02g00437 296 PANTHER COLD SHOCK PROTEIN 2 89 296 - -
Cla02g00437 296 SMART csp_8 94 159 IPR011129 GO:0003676
Cla02g00437 296 ProSiteProfiles Zinc finger CCHC-type profile. 241 254 IPR001878 GO:0003676|GO:0008270
Cla02g00437 296 SUPERFAMILY Nucleic acid-binding proteins 89 158 IPR012340 -
Cla02g00437 296 Pfam 'Cold-shock' DNA-binding domain 94 158 IPR002059 GO:0003676
Cla02g00437 296 ProSiteProfiles Zinc finger CCHC-type profile. 278 293 IPR001878 GO:0003676|GO:0008270
Cla02g00437 296 SUPERFAMILY Retrovirus zinc finger-like domains 231 294 IPR036875 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00437 - - - csv:101205517 155.606
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00437 Cla-Chr2:4305437 Cla10g00074 Cla-Chr10:757573 4.26E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g135 . . . . . Bpe12g00116 . . Cmo19g00739 . . . . . Sed01g3135 . Cpe15g00585 Bhi05g01731 Tan02g0700 Cmetu01g0199 . Hepe02g0435 . . Cla02g00437 Cam02g0446 Cec02g0444 Cco02g0462 Clacu02g0448 Cmu02g0442 Cre02g0776 Cone12ag1224 Cone8ag1275 . . . . . Cme01g01275 Blo04g00561 Blo13g00516 Bda15g01039 Bda14g00610 Bpe15g00819 . Bma03g00602 . . . . . Cma19g00731 . Car19g00560 . . . . . . . . . . . . . . . . Lsi11g01191 . Chy01g00689 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001587 3 2 3 3 4 2 3 2 2 2 2 2 2 2 2 3 2 4 4 2 2 2 2 0 1 3 2 3 2 2 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60595 PF00313 CSD 2.70E-24 CL0021 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00437 Cla_Chr02 FPKM 1.209284 1.297437 0.788652 1.166066 1.153064 1.581412 2.022067 0.0 0.0 0.0