Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00438 ATGACGAGGAAGAAGAGGAAGACGAGAGAGGCAGCCACAATCCATCCCAGAAACAAATACGCTGAAAACCCCCCAGATTTTGCTCTCTTAGCCTCTCTATACCCTTCCTTTCAACCCTTCGTCTCTCTCCATCCCCGACCCAGAATCGACTGGACCGATTTCAATGCCACCCGTGAGCTTACCCGGGTTTTGCTTCTCCATGACCATGCTCTTCATTGGTATCGCTCCTCCCCCTTTGCTTTCCACTGCTCTATTTTCTGTCTCCCTGTTTATATTCCATGTTTTATCTTCCCAATAGCCGAAGGTGCTTTGTTATGTCTTTATGATTTAAGTGTAAGTAGACCTCTACATCCCAGGTGGATTCCTGATGGACAGCTCTGCCCTACAGTACCTAATAGATCAAATTATATTCATTGGCTTGAAGATCTTTTGTCATCTGATATCATTGCAAAGAAAAATAGTGATAGCGGTTGTGTAAGAGGTTTTGACATAGGAACTGGGGCAAATTGCATTTACCCACTTCTTGGAGCCTCTCTTCTTGGGTGGCGTTTCGTCGGGACAGATGTGACTGATGTAGCACTAGAGTGGGCTGAAAGAAATGTTAAAAGCAATCCACATGTTTCTGAACTTATTGAAATTAGGAAGGTAGATGATACCTCAGACGACCTCTCTACAGAATTATATAATAGTGTAGCAGTCGATAGTGAATGCAAGATTTTAACTGAGATGGATGGTAGGGAAGAAGGGCCACCCCTGCCCTTGTCCTTGTCAACGGAGATAGTCCACTCAGAGAAGCGGTATCATGGTCCTCCCATTCTTCTTGGTGTTGTAAAAGATGGTGAGGAGTTTGACTTTTGCATGTGCAATCCTCCCTTTTTCGAGAGTATGGATGAAGCAGGGTTGAATCCGAAGACTTCTTGTGGTGGAACACCACAAGAGATGGTTTGTCCAGGTGGGGAGAGGGCATTTATCAGTCGTATGATTGAAGACAGCATTGTTTTGAAGCAGACTTTCCGGTGGTATACTTCAATGATTGGGAAAAAATCAAACCTCAGCTTTCTGATATCTAAACTTTGGAAAGTTGGAGTGACAGTAGTCAAGACTACAGAATTTGTTCAAGGCCAAACTTGCCGGTGGGGACTTGCTTGGTCTTTTATGTCCACAGCACGGAAAATTATATCTCCTCATGTCACTAACAAGAATGTCTTGTCTTTCATGCTCGAGGGCCTCCTTCCACAAGTCAGTGCCTTGAGTATACTGCAATCAGTTGAACATTTTCTTAGCACCGGTGGAGCTTCTTGTAAATTGAACGCTTCTTCATTCACAGTAGATATTACTGCATCTGAGGATCATTGTCGGGCAATTCTCAAGAATGGGGCATGTGAAATGGACAAAGGCGGCAGTTGTGTAACTGTGGAAAAATCAGAGCCTCAACCCTCAACTGATCTGTGTTTTCGAGTTTCGGTCTTTCAGCAGATCCCTGGCACGCTTCTTGTGAAAGGCTCCTTGCATCATAAGAGTAGTCCTTCTGCAGACGTGGGATTTGGTGTTTTTGTTGTGCGTATTGGGAATGTGGAATACTTGTCCATTTCTGGATTTGGGCATTAG 1608 44.28 MTRKKRKTREAATIHPRNKYAENPPDFALLASLYPSFQPFVSLHPRPRIDWTDFNATRELTRVLLLHDHALHWYRSSPFAFHCSIFCLPVYIPCFIFPIAEGALLCLYDLSVSRPLHPRWIPDGQLCPTVPNRSNYIHWLEDLLSSDIIAKKNSDSGCVRGFDIGTGANCIYPLLGASLLGWRFVGTDVTDVALEWAERNVKSNPHVSELIEIRKVDDTSDDLSTELYNSVAVDSECKILTEMDGREEGPPLPLSLSTEIVHSEKRYHGPPILLGVVKDGEEFDFCMCNPPFFESMDEAGLNPKTSCGGTPQEMVCPGGERAFISRMIEDSIVLKQTFRWYTSMIGKKSNLSFLISKLWKVGVTVVKTTEFVQGQTCRWGLAWSFMSTARKIISPHVTNKNVLSFMLEGLLPQVSALSILQSVEHFLSTGGASCKLNASSFTVDITASEDHCRAILKNGACEMDKGGSCVTVEKSEPQPSTDLCFRVSVFQQIPGTLLVKGSLHHKSSPSADVGFGVFVVRIGNVEYLSISGFGH 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4322190 4329765 + ClCG02G004230.2 Cla02g00438 266564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00438 535 Pfam RNA methyltransferase 271 386 IPR010286 GO:0008168
Cla02g00438 535 Pfam RNA methyltransferase 121 220 IPR010286 GO:0008168
Cla02g00438 535 Pfam RNA methyltransferase 11 73 IPR010286 GO:0008168
Cla02g00438 535 PIRSF Mtase_ZK1128 1 75 IPR017182 GO:0008168
Cla02g00438 535 PIRSF Mtase_ZK1128 117 483 IPR017182 GO:0008168
Cla02g00438 535 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 3 511 IPR010286 GO:0008168
Cla02g00438 535 Gene3D Vaccinia Virus protein VP39 116 387 IPR029063 -
Cla02g00438 535 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 386 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00438 K11393 METTL16, METT10D; U6 snRNA m6A methyltransferase [EC:2.1.1.346] - csv:101205279 857.44
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g132 . . . . . Bpe12g00114 . . Cmo19g00738 . . . . . . . Cpe15g00584 Bhi05g01732 . . . . . . Cla02g00438 Cam02g0447 Cec02g0445 Cco02g0464 Clacu02g0449 Cmu02g0443 Cre02g0777 . . . . . Csa07g00088 . Cme01g01276 . Blo13g00519 Bda15g01041 . . . . Bma08g00761 . . . . Cma19g00729 . Car19g00559 . . . . . . . . . . . . . . . . Lsi11g01188 . Chy01g00690 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006273 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 6 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00438 Cla_Chr02 FPKM 8.329477 7.526605 5.20781 5.413724 4.62005 3.950795 4.28412 6.849673 6.540394 7.596319