Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00440 ATGGCCTACTCTTCACCACTTAGTTATGTAGCCTTCTCATTGCTTCTGATTGCTGCAGCGGTTCGAGGATTGCCAATCAGAGAAGCCACAGTGCACGACCTCCAGCTAGCTTTCAAGCAAAACCAGCTCACTTCGAGGGGACTTGTTGAGTTCTACATTGGAGAAATTCGCAGACTCAACCCGGTTCTCCATGGGGTCATAGAAATCAACCCAGACGCATGGCTGCAAGCTTACAAGGCTGACAGAGAACGTGAGGCTAAGAAGCCTGGATCGCTTCATGGGCTGCACGGAATTCCAGTATTACTCAAGGATAACATTGGGACTAAGGATAAGTTGAATACTACTGCTGGATCGTTCGCATTGCTTGGTTCTATTGTGCCTCGTGATGCAGGTGTAGTGAAGAGACTAAGGAGGGCTGGAGCTATCATACTGGGAAAGGCTAGCTTGAGTGAATGGGCTGATTTTAGGTCCCTCACTGCTCCAGCTGGTTTGAGCGCAAGAGGTAGTCAGGGAAAGAATCCATATGTTTTATCAGCATCACCCTGTGGATCCAGCAGTGGACCTTCCATATCAGTTGCAGCAAACATAGCAGCAGTGTCAATAGGAACCGAGACGGACGGTTCTATCCTCTGTCCAGCTAGTTTTAACTCGGTTGTCGGCATCAAACCAACGGTTGGCCTCACTAGTAGAGCAGGTGTCATTCCAGTCTCCCCAAGACAAGACACTATTGGGCCAATTGGCAGGACAGTGACAGATGCTGTAATAGTTCTTGACACCATTGTAGGATTTGATTACAATGATGCAGCCACTAAAACAGCCTCCAAGTACATTCCATATGTTGGCTATCAACAATTCCTCAATCCAAATGGGTTGAAAGGGAAAAGATTAGGAATTGTGAGAAACCCCTTTTTCAGCTTCTTCAATGATTCAGCCATCACACAAGCTTTTGAGGATCATTTCAACACTCTAAAGCAAGGTGGTGCTATTTTGATAGACAATCTAGAGATAGAAAACATAGATATCATCTTAAACGTGACTGGAAGTGGAGAATCAGTGGCATTGCTTGCTGAATTCAAACAATCTTTAAATGGGTACTTGAAAGAGCTCGTGGTTTCCCCTGTTCGAAGTTTGGCCGACATAATCGCCTTCAATAACGCAAACCCAGATCAGGAACTGCTCGACGTTTTCGGCCAGGAGATTTTTCTGGCGGCCGAAGCCACAAATGGGATCGGCGACGAGCAGACGGCGGCTCTGTTGAACTTAGCGAAGCTGACGGAGGATGGGTTTGAGAAATTGGTGAAGGAGAAGCGGTTGGATGCGGTGGTGACGCCAGGTTCCGGCATAGCTACAGTGCTTGCAATTGGGGGTTTACCGGGAATCAATGTTCCGGCGGGATACGATGGCGGAGGAGTTCCATTTGGGATTAACTTTGGGGGATTGAAGGGTTCAGAGGGGAAGCTGATTGAGGTTGCTTATGGGTTTGAGCAAGCCACTATGATAAGAAAGCCTCCTTCCTTCAAGCCTTGA 1527 47.48 MAYSSPLSYVAFSLLLIAAAVRGLPIREATVHDLQLAFKQNQLTSRGLVEFYIGEIRRLNPVLHGVIEINPDAWLQAYKADREREAKKPGSLHGLHGIPVLLKDNIGTKDKLNTTAGSFALLGSIVPRDAGVVKRLRRAGAIILGKASLSEWADFRSLTAPAGLSARGSQGKNPYVLSASPCGSSSGPSISVAANIAAVSIGTETDGSILCPASFNSVVGIKPTVGLTSRAGVIPVSPRQDTIGPIGRTVTDAVIVLDTIVGFDYNDAATKTASKYIPYVGYQQFLNPNGLKGKRLGIVRNPFFSFFNDSAITQAFEDHFNTLKQGGAILIDNLEIENIDIILNVTGSGESVALLAEFKQSLNGYLKELVVSPVRSLADIIAFNNANPDQELLDVFGQEIFLAAEATNGIGDEQTAALLNLAKLTEDGFEKLVKEKRLDAVVTPGSGIATVLAIGGLPGINVPAGYDGGGVPFGINFGGLKGSEGKLIEVAYGFEQATMIRKPPSFKP 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4338495 4340677 - ClCG02G004250.2 Cla02g00440 266566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00440 508 Gene3D Amidase signature (AS) domain 19 506 IPR036928 -
Cla02g00440 508 SUPERFAMILY Amidase signature (AS) enzymes 26 505 IPR036928 -
Cla02g00440 508 Pfam Amidase 48 450 IPR023631 -
Cla02g00440 508 PANTHER AMIDASE 19 508 - -
Cla02g00440 508 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 19 508 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00440 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101204792 866.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00440 Cla-Chr2:4338495 Cla04g00191 Cla-Chr4:6233773 1.40E-25 dispersed
Cla02g00440 Cla-Chr2:4338495 Cla02g00441 Cla-Chr2:4351416 0 tandem
Cla09g01610 Cla-Chr9:32250671 Cla02g00440 Cla-Chr2:4338495 4.61E-24 transposed
Cla02g00440 Cla-Chr2:4338495 Cla02g01140 Cla-Chr2:24559273 4.98E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g127 . . . . . . . . . . . . . . Sed05g2229 . . Bhi05g01735 Tan02g0703 Cmetu01g2553 . . . . Cla02g00440 Cam02g0449 Cec02g0448 Cco02g0467 Clacu02g0451 Cmu02g0445 Cre02g0779 Cone12ag1220 . . . . . Chy11g00283 Cme01g01278 . Blo13g00522 Bda15g01043 . Bpe15g00824 . . Bma08g00763 . . . . . . . . . Bhi10g01879 Tan05g1171 . . Hepe08g0271 . . . . . . . . . . Csa02g01366 Chy01g00692 Cme11g00405
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00440 Cla_Chr02 FPKM 2.817073 2.351518 52.685699 47.158222 1.373927 1.436633 1.576932 0.0 0.0 0.0