Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00441 ATGAACATCGTCTTCTTCCTCTTAGCTTTCTTAATCTTCACCGGCTGCGCCAACTCCTCCGACTTCTCCATCGACGAAGCCACCGTCGCCGAAATCCAAAATGCCTTTTCCCAAAACAAACTCACCTCCACACAACTTCTAGATCATTACCTCAACAAGATTCATTTCCTCAATCCACTCCTCAAAAGCGTTCTCGAAGTGAATCCAGATGCAAGAGCTCAAGCGGAAGCCGCCGATCGAGAGAGAATCCTCGCCGGTGGAAAAGCCCTAGGTGAACTCCATGGAATTCCAGTTCTGCTCAAGGACGCCATTGCGACCAAGGATCGCCTCAATACCACCGCCGGATCCTTCGCGTTGCTGGGTTCGGTGGTGCCTCGAGATGCGACGGTGGTTAGTCGCCTGAGGAACGCCGGCGCGGTGATTTTGGGGAAAACTTCGCTTACAGAATGGTATGGGTCTCGTTCTTTGAAGATTCCCAATGGATGGTGTGCTCGTGGCGGTCAAGCGCTGAACCCATATGGAAAAGGAGGAGATCCATGTGGATCAAGCAGTGGGTCTGCAATATCGGTGGCGGCGAACATGGCGGCGATGTCTTTGGGGACGGAAACTGATGGGTCAATTCTGTGTCCGGCCGATTACAACTCGGTGGTTGGCATCAAGCCCACCGTCGGTCTCACGAGCCGGGCCGGCGTTATCCCTATCTCTCCTCGCCAAGACACAATTGGGCCCATATGTAGGACAGTTTCTGATGCAGTTTATGTGCTTGAAGCTATTGTGGGATTTGACCCAATGGACTATGAAGCAACCAAGGAAGCATCTCAATTCATACCTTCAGGTGGTTACAAACAGTTTCTGAGGAAAGATGGGCTCAAAGGAAAGAGATTGGGCATTATTAGGCATCCATTTCTTGACTTGTATCCCAATGACTCCATTGCCATTCCAACCTTTGACCAACATCTCAATCTTCTAAGGAAAAATGGAGCAACCATTGTCGATAACCTTCAAATATCAAATGTAGATGTCATTTTGAATCCTTTTGAAAGTGGTGAATTCATTACAATGATAGCTGAGTTCAAGGTGACCCTAAACGATTACCTCAAGAAACTGATCCAAAGTCCAGTCAGATCTTTGGCTGACATTATTGCCTTCAACAAAAACCACCCTGAACTGGAGAACATGGAAGAGTATGGCCAAGATGCCTTTCTTTTATCTGAGCAAACAGACGGGATTGGAGAGATGGAGAAGGAGGCGATTAGTAGGATGATGAACTTATCGCGAGATGGGTTCGAGGAAATAATGAAAGCCAACAATCTGGATGCAATGGTGACATTAGGGACAGGAGCAGAAAGTGTCCTGGCAATTGGGGGATACCCTGCAATAACTGTCCCAGCTGGATACGAAGGAAATGGAAACCCATTTGGTATTCTCTTTGGAGGTCTCAAAGGGAGTGAACCGAAGCTAATTGAGATTGCTTATGCATATGAACAAGCCACCATGGCGGACGTCGTCGATTTTGAGCTGGTTGGCGTCGTCGACTTTGCACTCTAG 1548 48.13 MNIVFFLLAFLIFTGCANSSDFSIDEATVAEIQNAFSQNKLTSTQLLDHYLNKIHFLNPLLKSVLEVNPDARAQAEAADRERILAGGKALGELHGIPVLLKDAIATKDRLNTTAGSFALLGSVVPRDATVVSRLRNAGAVILGKTSLTEWYGSRSLKIPNGWCARGGQALNPYGKGGDPCGSSSGSAISVAANMAAMSLGTETDGSILCPADYNSVVGIKPTVGLTSRAGVIPISPRQDTIGPICRTVSDAVYVLEAIVGFDPMDYEATKEASQFIPSGGYKQFLRKDGLKGKRLGIIRHPFLDLYPNDSIAIPTFDQHLNLLRKNGATIVDNLQISNVDVILNPFESGEFITMIAEFKVTLNDYLKKLIQSPVRSLADIIAFNKNHPELENMEEYGQDAFLLSEQTDGIGEMEKEAISRMMNLSRDGFEEIMKANNLDAMVTLGTGAESVLAIGGYPAITVPAGYEGNGNPFGILFGGLKGSEPKLIEIAYAYEQATMADVVDFELVGVVDFAL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4351416 4355516 - ClCG02G004260.2 Cla02g00441 266567

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00441 515 Pfam Amidase 46 442 IPR023631 -
Cla02g00441 515 PANTHER C869.01-LIKE PROTEIN, PUTATIVE-RELATED 7 500 - -
Cla02g00441 515 PANTHER AMIDASE 7 500 - -
Cla02g00441 515 SUPERFAMILY Amidase signature (AS) enzymes 7 497 IPR036928 -
Cla02g00441 515 Gene3D Amidase signature (AS) domain 14 502 IPR036928 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00441 K01426 E3.5.1.4, amiE; amidase [EC:3.5.1.4] - csv:101205749 855.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00441 Cla-Chr2:4351416 Cla02g01140 Cla-Chr2:24559273 0 dispersed
Cla02g00440 Cla-Chr2:4338495 Cla02g00441 Cla-Chr2:4351416 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g125 . . . . . . . . . . . . . . Sed05g2230 . . Bhi05g01736 Tan02g0704 Cmetu01g0664 . Hepe02g0439 . . Cla02g00441 Cam02g0450 Cec02g0449 Cco02g0468 Clacu02g0452 Cmu02g0447 Cre02g0780 . . . . . Csa07g00086 Chy11g00285 Cme01g01279 . Blo13g00523 . . . . . . Sed01g0214 . . . . . . . . Bhi10g01880 Tan05g1177 Cmetu11g0691 . Hepe08g0270 . . . . . . . . . . Csa02g01364 Chy01g00693 Cme11g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000457 1 5 3 2 1 4 2 4 4 5 3 4 2 5 6 2 4 6 1 5 5 5 4 5 4 1 5 4 8 7 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00441 Cla_Chr02 FPKM 8.980869 9.345284 8.453426 7.773499 11.240503 11.662693 12.169535 5.711484 5.114236 5.911972