Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g00442 | ATGGCGGCAATGGTTTCTCCATGGGGAAAACCAGGCGCTTGGGCCCTCGATTCCGAGGAACACGAAGCTCAACTCCTTAAAGAAGAGGAACAGCAGAAACAGCAGGAACTCAGCCTGGATTTTCCTTCCCTCAACGACGCCTTGGCCACCAAGCCGAAGAAGAAAGGGCAAACTCTCTCATTGGCTGAGTTCAACACCTATGGAATTAGTGGGTCGAGATCTTCTTCCCAAGGCCCCAGGCATGAGGATTTGATTGTACTACCCACCGGCCCTCGCCAACGGACGGCGGAGGAGCTCGACCGGAACAGGCTCGGTGGTGGATTCAGGAATTATGGTTCGAATGGTTCGTATGAGAGGAACAATAGGTATTCTAATGGGGATGATTCGTCTGATTCGAAATGGGGTTCGTCTAGGGTTTCTGATGAGAATAGGAGGAATAGTAATGGGTCTAATAGGGGGGATTCGAGTAAGGAATTTACATCTTCTAGGGCTGACGAGGTTGATAATTGGGCTTTAACTAAGAAACCGATGGCTGCAAATGGATTTGAGAGGAGGGAAAGAGGAGTAGGGTTTTCGGATTCGCAATCTTCAAAAGCCGACGAATCAGAGAGTTGGGTTTCTAATAAGAGCAATGTTCCGTCGGATGGAAGGAGATTTGGAGCTAACGGCGGATTTGACAGAGAGCGACGAGGAGGGTTCACGGCGAGCGGCGGCGGGGCAGATTCCGACAATTGGGGGAGGAAGAAAGAAGAAGGTAATACTGGTGGCGTCATTGGTGGTCGGCCAAAGCTTAATCTGCAGCCACGTACGCTGCCGGTTAGCGACGGGAAATCATCGGAGATATCAGGGACGACGGCGAGGCCCAAGAGTTCGAACCCATTTGGAGCGGCGAGGCCAAGGGAAGAGGTTTTAGCCGAGAAGGGACATGACTGGAAAAAGCTTGACGAGCAGCTAGAGTCGAAGATTAAGGAGGTGTCACTGGAGGAGAAGACAGAGAAATCCAACGCCTTTTCCTTTGGGAAAAAGAGCTTTGGCAATGGAAATAGCCGGGCTGCTGAGGATAGAACAGAGAAGAGCTGGAGGAAGCCGGAGTCTCCACCGCAGGAGTCACCGGAACCTCGTCCCGACAGTGGGGAAGAAAATGAAAATGGAGATTGCAAAGCCGATGGCGAACACAAAGGGGGCGAGAATGGAGCTTGA | 1200 | 51.67 | MAAMVSPWGKPGAWALDSEEHEAQLLKEEEQQKQQELSLDFPSLNDALATKPKKKGQTLSLAEFNTYGISGSRSSSQGPRHEDLIVLPTGPRQRTAEELDRNRLGGGFRNYGSNGSYERNNRYSNGDDSSDSKWGSSRVSDENRRNSNGSNRGDSSKEFTSSRADEVDNWALTKKPMAANGFERRERGVGFSDSQSSKADESESWVSNKSNVPSDGRRFGANGGFDRERRGGFTASGGGADSDNWGRKKEEGNTGGVIGGRPKLNLQPRTLPVSDGKSSEISGTTARPKSSNPFGAARPREEVLAEKGHDWKKLDEQLESKIKEVSLEEKTEKSNAFSFGKKSFGNGNSRAAEDRTEKSWRKPESPPQESPEPRPDSGEENENGDCKADGEHKGGENGA | 399 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4358727 | 4360360 | - | ClCG02G004270.1 | Cla02g00442 | 266568 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g00442 | 399 | Coils | Coil | 16 | 38 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 192 | 215 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 300 | 336 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 113 | 133 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 351 | 399 | - | - | |
| Cla02g00442 | 399 | Pfam | Plant specific eukaryotic initiation factor 4B | 4 | 328 | IPR010433 | GO:0003743 | |
| Cla02g00442 | 399 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 | 1 | 366 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 68 | 399 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 134 | 148 | - | - | |
| Cla02g00442 | 399 | MobiDBLite | consensus disorder prediction | 271 | 291 | - | - | |
| Cla02g00442 | 399 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B | 1 | 366 | IPR010433 | GO:0003743 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla02g00442 | Cla02g01138 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla08g01723 | Cla-Chr8:29773372 | Cla02g00442 | Cla-Chr2:4358727 | 1.15E-44 | transposed | |
| Cla02g00442 | Cla-Chr2:4358727 | Cla02g01138 | Cla-Chr2:24544299 | 9.38E-122 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g00442 | - | - | bhj:120077882 | 684.1 |