Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00445 ATGCCTTTCTGTTTCTTCTTCTTCTTCTTGCTTCTTGCTTCAACTTTCTGCCATGGCAGTGACTTGACAACAGTGGAAGTTGTTGGGGTTGGAGAATGTGCAGACTGCCACAACAATAACATTAAAACCAATCATGCCTTCTCAGGGCTTAGTGTAAGCATCGACTGCAAACAAGAAGATGGAAAGATTGAAAGAAAAGGGGTTGCAAAGGTAGACGAAGAAGGAAAGTTCAAAGTGTTACTTCCAACTGAGGTTTTGAAAGATGGAAAATTAAAAGGGAAGTGCTTTGCACAACTTCACAGGCTTAGTGTAAGCATCGACTGCAAACAAGAAGATGGAAAGATTGAAAGAAAAGGGGTTGCAAAGGTAGACGAAGAAGGAAAGTTCAAAGTGTTACTTCCAACTGAGGTTTTGAAAGATGGAAAATTAAAAGGGAAGTGCTTTGCACAACTTCACAGTGCTTCTTCTACTCCTTGTCCTTCTCATGATGGCTTGGAAATGGCTTCCATGATTGTATTCAAATCCAAAGGTGAGGGAAAACAAACATTTGGTTTACCTAATAAGCTCAAGTTCAAGACTGAAACTTGTGTTTCTGCCTTCTTTTGGCATCATTATTATCATCACCCTCCTTTGCCTCCTATCTCTTTACCTGTTTTCCCTCCTCATCCTCCTTTGTTTAACCATCCCTATTTGTTCCCTCCTTACCATCACAAGCTCTTCCCTCCTAAAGTCTACATTCCCCCACCCACTCCGCTACCCCCACCGGTCTACGAAAAGCCTCCTCCCGTCTACGAGAAGCCTCCACCGGTGTACGAGAAGCCTCCTCCCGTCTACAAAAAGCCTCCACCGGTGTACAAGAAGCCTCCTCCCGTCTACAAAAAGCCTCCACCGGTGTACGAGAAGCCTCCTCCCGTCTACAAAAAGCCTCCACCGGTGTACGAGAAGCCTCCTCCCGTCTACGTGAAGCCTCCACCAGTACCGGTTTACAAGCCGAAGCCACCGGTTTACAAGCCAAAGCCACCAGCACCAGAGAAGCCATTGTCTCCTCCATCACCTGTTTATTATAAGCATCCATGGTATAAGATCCTCCCTCCAATTTCAAAGCTTCCTCCATGTCCACCAGTTCCAAAGGTTGTTATCCCTCCAAAGTACTTCTCTCACCCAAAGTTTGGCAAGAAATTTCCTCCTCTGTCTCCTTCTGTTCCACATCCTAATTAG 1218 45.4 MPFCFFFFFLLLASTFCHGSDLTTVEVVGVGECADCHNNNIKTNHAFSGLSVSIDCKQEDGKIERKGVAKVDEEGKFKVLLPTEVLKDGKLKGKCFAQLHRLSVSIDCKQEDGKIERKGVAKVDEEGKFKVLLPTEVLKDGKLKGKCFAQLHSASSTPCPSHDGLEMASMIVFKSKGEGKQTFGLPNKLKFKTETCVSAFFWHHYYHHPPLPPISLPVFPPHPPLFNHPYLFPPYHHKLFPPKVYIPPPTPLPPPVYEKPPPVYEKPPPVYEKPPPVYKKPPPVYKKPPPVYKKPPPVYEKPPPVYKKPPPVYEKPPPVYVKPPPVPVYKPKPPVYKPKPPAPEKPLSPPSPVYYKHPWYKILPPISKLPPCPPVPKVVIPPKYFSHPKFGKKFPPLSPSVPHPN 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4377667 4381722 - ClCG02G004300.1 Cla02g00445 266571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00445 405 PANTHER PROLINE-RICH PROTEIN 2 3 100 - -
Cla02g00445 405 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 102 286 - -
Cla02g00445 405 PANTHER PROLINE-RICH PROTEIN 2 102 286 - -
Cla02g00445 405 PANTHER EXTENSIN, PROLINE-RICH PROTEIN 3 100 - -
Cla02g00445 405 Pfam Pollen protein Ole e 1 like 27 101 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00445 - - - csv:101205516 242.662
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla02g00445 Cla02g01110 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00445 Cla-Chr2:4377667 Cla02g01110 Cla-Chr2:23828370 6.00E-46 dispersed
Cla02g00445 Cla-Chr2:4377667 Cla02g01128 Cla-Chr2:24392590 1.04E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g114 . . Bda06g00966 . Bpe07g00486 . . . . Cmo11g01725 Cma02g00326 Cma20g00768 Car02g00207 Car20g00671 Sed05g2235 Cpe04g00577 . Bhi05g01744 Tan02g0711 Cmetu01g1502 . . . . Cla02g00445 Cam02g0454 Cec02g0452 Cco02g0471 Clacu02g0455 Cmu02g0450 Cre02g0783 . Cone8ag1266 . . . . Chy11g00292 Cme01g01283 Blo04g00553 . . Bda14g00602 . . Bma03g00593 . Sed05g3586 Cmo02g00321 Cmo20g00767 Cma11g01394 . . . . . Bhi10g01887 Tan05g1183 Cmetu11g2155 . Hepe08g0942 . . Cla02g01110 Cam02g1182 . . Clacu02g1172 Cmu02g1132 . Lsi11g01181 . Chy01g00696 Cme11g00414
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001811 3 2 2 5 2 3 1 3 3 1 3 3 2 2 2 2 3 3 2 2 1 2 1 2 2 1 2 2 2 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00445 Cla_Chr02 FPKM 87.18679 96.885422 68.281097 62.295311 98.564888 99.580238 93.584297 106.707024 112.389076 101.879372