Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00464 ATGGGTTTCCGGTTGCCTAAAATTGTTCATGTTAAGCAAAGTCTTCGTCGGTCTTCATCAACTGGAAATGGAGCATCGGCGGTTGACGTTCCAAAGGGGTTCTTTACTGTTTATGTTGGTGAAGTACAAAAGAAGCGTTTCGTCATTCCAATGTCGTACTTGAACCAGCCTACTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATGATCACCCCATGGGCGGCATCACAATTCCTTGCAGTGAAGAAATTTTCCTTGATCTCACTCAAAGTCATGTTATATGGATTCACAAGCAACGTGTCCTTCCATATTCCAACTCTCAAAAGAAACTTCAAAGTTCAAATTTCCTTTCGGGGTCTCATATTTCGAATCTTGGAACATATTACAACATGGGTTTCCGTTTGCCCCGAATTGTTACTGCTAAGCAAAGTCTCCAGCGATCTTCATCAACAGGAAATGGAACATCCCCAAAAGCTGTTGACGTTCCCAAGGGCTATTTTACTGTTTATGTTGGTGAGGAACAAAAGAAGCGTTTTGTCATCCCACTGTCTTACTTGAACCAGCCTTCTTTTCAAGATTTGTTGAGTCAAGCAGAAGAAGAATTTGGATATAATCATCTAATGGGTGGCATCACAATTCCTTGCCGTGAAGACGAGTTCCTCAATCTCACTCAGAGTTGGAATGGCTCGTGA 702 41.6 MGFRLPKIVHVKQSLRRSSSTGNGASAVDVPKGFFTVYVGEVQKKRFVIPMSYLNQPTFQDLLSQAEEEFGYDHPMGGITIPCSEEIFLDLTQSHVIWIHKQRVLPYSNSQKKLQSSNFLSGSHISNLGTYYNMGFRLPRIVTAKQSLQRSSSTGNGTSPKAVDVPKGYFTVYVGEEQKKRFVIPLSYLNQPSFQDLLSQAEEEFGYNHLMGGITIPCREDEFLNLTQSWNGS 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4496433 4498704 + ClCG02G004412.1 Cla02g00464 266590

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00464 233 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 11 94 IPR003676 GO:0009733
Cla02g00464 233 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 144 229 IPR003676 GO:0009733
Cla02g00464 233 PANTHER - 144 229 - -
Cla02g00464 233 Pfam Auxin responsive protein 148 227 IPR003676 GO:0009733
Cla02g00464 233 Pfam Auxin responsive protein 17 92 IPR003676 GO:0009733
Cla02g00464 233 PANTHER - 11 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00464 K14488 SAUR; SAUR family protein - vri:117913455 206.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00458 Cla-Chr2:4467446 Cla02g00464 Cla-Chr2:4496433 1.96E-32 dispersed
Cla02g00464 Cla-Chr2:4496433 Cla02g00466 Cla-Chr2:4504731 5.12E-54 dispersed
Cla02g00469 Cla-Chr2:4518803 Cla02g00464 Cla-Chr2:4496433 5.52E-29 dispersed
Cla11g00354 Cla-Chr11:3944153 Cla02g00464 Cla-Chr2:4496433 2.21E-34 dispersed
Cla11g00355 Cla-Chr11:3948177 Cla02g00464 Cla-Chr2:4496433 3.54E-34 dispersed
Cla11g00357 Cla-Chr11:3972188 Cla02g00464 Cla-Chr2:4496433 1.16E-25 dispersed
Cla02g00463 Cla-Chr2:4487046 Cla02g00464 Cla-Chr2:4496433 5.89E-30 tandem
Cla02g00464 Cla-Chr2:4496433 Cla02g00465 Cla-Chr2:4499530 1.69E-47 tandem
Cla11g00348 Cla-Chr11:3896738 Cla02g00464 Cla-Chr2:4496433 1.24E-49 wgd
Cla02g00464 Cla-Chr2:4496433 Cla08g01435 Cla-Chr8:27198292 1.04E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g80 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00464 Cam02g0470 Cec02g0470 . Clacu02g0473 Cmu02g0467 Cre02g0801 . . . . Lsi10g00455 . Chy11g00309 Cme01g01296 . . . . . . Bma03g00588 Bma08g00770 . Cmo02g00338 Cmo20g00780 . . . . . . . . . . . . . . . . . . . . Lsi11g01165 Csa02g01336 Chy01g00714 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000134 9 7 1 5 4 10 0 0 10 1 8 11 13 9 11 13 10 2 1 9 8 8 0 6 7 10 7 21 6 6 213
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00464 Cla_Chr02 FPKM 11.36908 12.890133 10.880637 10.09996 24.428356 21.389305 25.834723 9.273603 9.616003 9.362873