Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00474 ATGGGTGATACTGAAGATGCTAACACTGAGAACATGCGAAATCTTCAATGTTCGTATGGAGTATCTTCTTCTTCAGCTGGAAATCTTCCTTTCTCGATGGATCAACTTAAAATTTCCCAAATGAACTGCTCACAAATCCGTCCACCGCACTTTCAGTCAAATTTTCTTGCGGATAATAGTAGAAGAATTGGGATACCTCCTAGCCCCAACTCACCGCAGATCCCACCAATTTCACCGTATTCTCAGATCCCGATCTCGCGTCCGATGAATCAGCAAAATTATAACCCGGTGCCTACTCATTCCCGATCGTTGTCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGCCCATCTCCATTTCGTGAATCCCCAACTACATCGAATTCAGATCAGGTTTCTGCAGATACATCAATGGAGGATAGGGATAACAGTTCACATTCTTTGTTGCCTCCCTCACCTTATATGAGGGCCAATTCTTCTAAGATGGGAGATTCTTTACCTCCTCGTAAAGCACATAGGCGGTCTAGTAGTGATATTCCATTTGGATTATCTTCAATGATTCAGCCATCTCCTCTTCTCCCATTCAATAGCTCTGGTGGATTGGAACGATCAATTAGTAGTAAAGAGAATGCTGGCTTATTAAAGCCCGCCAGCCAGTTTGTTAAAAGAGAACCTAGTTTGGAGAAAAGCGTTGACAACAATTTAGAAGGAATGGGTGAGAGGAAATCTGATGGGGACAGCGTGGACGACTTGTTTTCTGCTTATATGAATTTGGATAATATCGATTTGTTCAACTCTTCTGGGACTAACGACAAGAATGGTCAAGAGAATCGAGAGGATTTGGATAGTAGGGGTAGTGGAACAAAGACAAATGGGGGTGAGAGCAGTGATAATGAAGCAGAAAGCAGTGTAAATGAAAGCGGGGATAGCGCTCAAATGCCTGGATTGAATTCATCTGCTGAGAAGAGGGAAGGGATCAAACGGACCGCAGGGGGAGATATTGCTCCAACTACCAGACATTACCGAAGTGTCTCCATGGATAGTTTCATGGGCAAGTTGCAGTTTGGTGATGAGTCTCCCAAAATGCCTCCCACACCACCTGGCGTTCGCCCGGGGCAACTTTCTTCAAACAACTTAGTTGATGGTAATTCTGCTCCATTCAGTTTGGAGTTTGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCCGAGATTGCTTTGACTGATCCCAAGCGTGCAAAGAGGATCTTGGCAAACCGTCAGTCTGCTGCTCGATCGAAAGAGCGAAAGATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACACTGTCCGCTCAACTCACACTTCTACAGAGAGATTCCGTGGGCCTTACAAACCAGAATAATGAACTGAAGTTTCGACTACAAGCCATGGAACAACAAGCACAACTACGGGATGCTCTTAACGAAGCCTTAACCGCGGAGGTTCAGAGATTGAAACTCGCTACAACAGAGCTAAATGCGCAGTCTCATCCCTCCAACGGAGTAATGCCCCAATCTTCCATCAATCACCATGGCCTACAGCTTCAGCTTCAGCACCAGCAACAACAACAGATCCAGCAGAATGGGAATGCAACCACAAAACCAGAATCCAACCAATAA 1698 44.94 MGDTEDANTENMRNLQCSYGVSSSSAGNLPFSMDQLKISQMNCSQIRPPHFQSNFLADNSRRIGIPPSPNSPQIPPISPYSQIPISRPMNQQNYNPVPTHSRSLSQPSFFSLDSLPPLSPSPFRESPTTSNSDQVSADTSMEDRDNSSHSLLPPSPYMRANSSKMGDSLPPRKAHRRSSSDIPFGLSSMIQPSPLLPFNSSGGLERSISSKENAGLLKPASQFVKREPSLEKSVDNNLEGMGERKSDGDSVDDLFSAYMNLDNIDLFNSSGTNDKNGQENREDLDSRGSGTKTNGGESSDNEAESSVNESGDSAQMPGLNSSAEKREGIKRTAGGDIAPTTRHYRSVSMDSFMGKLQFGDESPKMPPTPPGVRPGQLSSNNLVDGNSAPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLATTELNAQSHPSNGVMPQSSINHHGLQLQLQHQQQQQIQQNGNATTKPESNQ 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4601216 4604414 - ClCG02G004450.1 Cla02g00474 266600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00474 565 SUPERFAMILY Leucine zipper domain 422 473 IPR046347 GO:0003700|GO:0006355
Cla02g00474 565 MobiDBLite consensus disorder prediction 1 25 - -
Cla02g00474 565 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 561 - -
Cla02g00474 565 MobiDBLite consensus disorder prediction 267 343 - -
Cla02g00474 565 MobiDBLite consensus disorder prediction 289 320 - -
Cla02g00474 565 Gene3D - 421 473 - -
Cla02g00474 565 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 561 - -
Cla02g00474 565 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 420 483 IPR004827 GO:0003700|GO:0006355
Cla02g00474 565 MobiDBLite consensus disorder prediction 59 188 - -
Cla02g00474 565 Pfam bZIP transcription factor 422 476 IPR004827 GO:0003700|GO:0006355
Cla02g00474 565 MobiDBLite consensus disorder prediction 68 82 - -
Cla02g00474 565 Coils Coil 501 521 - -
Cla02g00474 565 MobiDBLite consensus disorder prediction 228 250 - -
Cla02g00474 565 CDD bZIP_plant_RF2 423 472 IPR044759 GO:0003700|GO:0006355
Cla02g00474 565 Coils Coil 438 493 - -
Cla02g00474 565 MobiDBLite consensus disorder prediction 219 250 - -
Cla02g00474 565 MobiDBLite consensus disorder prediction 538 565 - -
Cla02g00474 565 SMART brlzneu 418 482 IPR004827 GO:0003700|GO:0006355
Cla02g00474 565 MobiDBLite consensus disorder prediction 83 115 - -
Cla02g00474 565 MobiDBLite consensus disorder prediction 356 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00474 Cla-Chr2:4601216 Cla02g01861 Cla-Chr2:33792180 5.74E-52 dispersed
Cla02g00474 Cla-Chr2:4601216 Cla02g00475 Cla-Chr2:4615232 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60597 PF00170 bZIP_1 7.50E-09 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00474 - - cpep:111776417 949.888