Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00475 ATGGGTGATACTGAAGATGCTCGTACTGATAACCTACGAAATCTTCAATGTTCGTTTGGAACATCTTCCTCTTCTGCTTTAAAGCATCATTTCTCTATGGATCAACTTAAAATTTCTCAAATGAACTGCTCACAAGGCCGTGCACAGCATTTTCAGTCGAATTTTCTTGGAGATAATAGTAGAAGAATTGGGATACCTCCTTGTCCCAACTCACCGCAGATCCCACCAATCTCACCGTATTCCCAGATCCCGGTGTCGCGTCCGATGAACCAGCAGAGTTATAACTCAGTTCCTACTCATTCTCGATCGTTATCTCAGCCTTCTTTTTTCTCTCTCGATTCTTTGCCCCCTTTAAGTCCGTCTCCATTTCGTGACTCCCCTTCTACATCGAATTCAGATCAGGTTTCTGCTGATACGTCAATGGAGGATAGGGATGCCAGTTCACATTCTTTGTTGCCTCCCTCACCTTATACGAGAGCCAATTCTTCGAAGATGGGTGATGCTTTACCTCCTCGTAAAGCCCATAGGCGTTCTAACAGTGATATTCCATTTGGATTATCTTCGATGATTCAGTCATCTCCTCTTCTCCCTTTTAGTGGTTCAGGTGGATTGGAGCGATCAACTAGTAGTAAAGAGAATGCGGGAATATTTAAGCCGGCCAGCCAGTTTGTTAAAAGAGAGCCTAGTTTGGAGAAAAGCATTGATAACAATCTGGAAGGAATGGGTGAAAAGAAGTCTGAAGGGGACACTGTGGATGATTTATTCTCTGCTTATATGAATTTGGATAATATTGATTTGTTCAACTCCTCAGGGACCAACGACAAGAATGGTCATGAGAATCGGGAGGATTTGGATAGTAGAGGTAGCGGAACAAAAACAGGGGGTGAGAGCAGCGATAATGAAGCAGAAAGCAGTGTGAACGAAAGTGGGGATAACTCTCAAGTGCCTGGATTGAATTCGTCTGCTGAGAAGAGGGAAGGGATTAAACGGACTGCAGGGGGAGATATTGCTCCAAATAACAGACATTACCGGAGTATCTCCATGGATAGTTTTATGGGCAAGTTACAGTTTGGTGATGAGTCACCGAAAATGCCTCCTACGCCGCCCGGCATTCGTCCAGGGCAACTTTCTTCAAACAACCTAGTTGACGGTAATTCAACTCCATTCAGCTTGGAGTTCGGTAATGGTGAGTTCAGTGGGGCTGAACTGAAGAAAATTATGGCAAATGACAAACTTGCGGAGATTGCACTAACCGATCCCAAGCGTGCAAAGAGGATTTTGGCTAACCGTCAATCTGCTGCTCGATCAAAAGAACGGAAAATGCGGTATATATCTGAGTTGGAACACAAGGTTCAGACTCTTCAGACAGAAGCTACCACGCTGTCTGCCCAACTCACGCTTCTGCAGCGAGACTCTGTTGGACTTACAAACCAGAATAATGAACTTAAGTTCCGTCTCCAAGCCATGGAACAGCAAGCACAACTACGGGATGCTCTAAATGAAGCATTAACTGCGGAGGTTCAGAGATTGAAGCTCACTACAACCAATATAAACGCGCAATCTCATCCCTCAGACGGGGTAATGGCTCAATCTTCTATGAATCACCACGGACTCCAACTTCAGCTTCAGCAGCAGCAGCAACAACATCACCAACAACAACAGCAACAACATATGCAGCAGAATGGCAGTGCAACCACAAAACCAGAGTCCAACCAATAA 1719 44.85 MGDTEDARTDNLRNLQCSFGTSSSSALKHHFSMDQLKISQMNCSQGRAQHFQSNFLGDNSRRIGIPPCPNSPQIPPISPYSQIPVSRPMNQQSYNSVPTHSRSLSQPSFFSLDSLPPLSPSPFRDSPSTSNSDQVSADTSMEDRDASSHSLLPPSPYTRANSSKMGDALPPRKAHRRSNSDIPFGLSSMIQSSPLLPFSGSGGLERSTSSKENAGIFKPASQFVKREPSLEKSIDNNLEGMGEKKSEGDTVDDLFSAYMNLDNIDLFNSSGTNDKNGHENREDLDSRGSGTKTGGESSDNEAESSVNESGDNSQVPGLNSSAEKREGIKRTAGGDIAPNNRHYRSISMDSFMGKLQFGDESPKMPPTPPGIRPGQLSSNNLVDGNSTPFSLEFGNGEFSGAELKKIMANDKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNNELKFRLQAMEQQAQLRDALNEALTAEVQRLKLTTTNINAQSHPSDGVMAQSSMNHHGLQLQLQQQQQQHHQQQQQQHMQQNGSATTKPESNQ 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4615232 4619655 - ClCG02G004460.1 Cla02g00475 266601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00475 572 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 419 482 IPR004827 GO:0003700|GO:0006355
Cla02g00475 572 CDD bZIP_plant_RF2 422 471 IPR044759 GO:0003700|GO:0006355
Cla02g00475 572 MobiDBLite consensus disorder prediction 275 289 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 57 249 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 268 342 - -
Cla02g00475 572 Gene3D - 420 472 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 181 216 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 68 82 - -
Cla02g00475 572 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 76 563 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 290 320 - -
Cla02g00475 572 Pfam bZIP transcription factor 421 475 IPR004827 GO:0003700|GO:0006355
Cla02g00475 572 SMART brlzneu 417 481 IPR004827 GO:0003700|GO:0006355
Cla02g00475 572 MobiDBLite consensus disorder prediction 355 381 - -
Cla02g00475 572 SUPERFAMILY Leucine zipper domain 421 472 IPR046347 GO:0003700|GO:0006355
Cla02g00475 572 MobiDBLite consensus disorder prediction 228 249 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 83 115 - -
Cla02g00475 572 Coils Coil 437 492 - -
Cla02g00475 572 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 76 563 - -
Cla02g00475 572 Coils Coil 535 555 - -
Cla02g00475 572 MobiDBLite consensus disorder prediction 516 572 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00475 Cla-Chr2:4615232 Cla02g01861 Cla-Chr2:33792180 1.54E-50 dispersed
Cla02g00474 Cla-Chr2:4601216 Cla02g00475 Cla-Chr2:4615232 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
60598 PF00170 bZIP_1 8.80E-09 CL0018 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00475 - - csv:101215703 980.704