Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00484 ATGTCCGTCTCTCAGCATTCATTTCCATCTTTCTACGTTCGATGCTTTATTCCACCCGTAAAGCTTCATCGTCTTCTCCAATTTACTCTGAAGCTACGCCTTGAATCCTTCTCTCTGCCATTGCGGTTTTGGATTGAAGTTCATTGCACGAGGCTTGAAGACGACGAAAAGCGCAGCAGAGTAGCAGAGGCTTCGGATCAGACCCAACGGCAGAAAAGAAGAAGGGGAAAAGGACTGAATCGAGGTGGTGGCCTGTTGGGCTGGGAGAAGGTTTGGGAAATGGGGGCGGTTGCTGGAGAGGAGTTGATGAAGTTGGAGAAAATGCAGGGGATAAATGCTCGTGAAGAGAAAATTCTTGTTTTAGTAAGGCTGAGACCCTTGAACGAGAAGGAGATTATGATGAATGAAGCTGCAGATTGGGAGTGTATCAATGATACTAGTATCTTGTACCGGAATACCTTACGGGAGGGGTCCACATTTCCAAGTGCCTATACTTTTGATAGAGTATTTCGAGGTGATTGCTCTACAAAGCAGGTGTACGAGGAAGGAGCCAGAGAAATTGCATTTTCTGTAGTCAGTGGTATCAACTCAAGTATTTTTGCATATGGTCAGACAAGCAGTGGAAAGACATATACCATGAATGGAATTCTTGAATATTCAGTGGCGGATATATTTGATTACATTAGGAGGCATGAAGAAAGAGCATTCATTGTGAAGTTTTCAGCTATTGAGATATATAATGAAGCTGTTAGAGACCTCTTGAGCACAGATACTAGTCCTCTCAGGCTGCTAGATGACCAGGAGCGAGGGACTATTGTGGAGAAAGTCACTGAGGAAACTTTGAGGGACTGGAACCATTTAAGGGAGCTCATTTCAATTTGTGAAGCTCAACGACGGATTGGAGAGACCTCGCTGAATGAGAAAAGTTCTAGATCTCATCAAATTATTAAACTGACAATTGAAAGTTCTGCTCGAGAGTTTTTAGGAAAAGACAATTCAACGACACTTGCTGCTAGTGTGAGTTTTATTGATTTAGCTGGGAGTGAACGTGCAGCTCAAGCATTATCAGCAGGGACGAGACTGAAAGAAGGATGTCACATAAATCGCAGTTTATTGACTCTGGGTACTGTCATTCGCAAATTAAGCAAAGGAAGAAATGGTCATATCAATTACAGAGATTCTAAGCTGACACGAATATTACAGCCCTGCTTAGGTGGCAATGCTAGAACAGCCATCATCTGTACATTGAGCCCTGCAAGAAGTCACGTTGAACAAACTAGAAACACTCTCTTGTTTGCTTGTTGTGCAAAAGAGGTGACAACAAAAGCTCAAGTCAACGTGGTCATGTCTGATAAGGCTTTGGTTAAGCATTTGCAGAAAGAGTTAGCGAGATTGGAGAGTGAGTTGAGAACTCCTGCCCCTGTTTCGTCCAGTTCTGAATATGCAGCCCTATTGAAAAAGAAAGATCTTCAAATTGAGAAGATGGCGAAGGAGATTAGAGAACTCACTAAGCAAAGGGATCTCGCTCAATCCCGAGTTGAAGATTTACTTCGTATGGTTGGACATGATGATGTCTCGAGAAAGGATGTCAAAACTAGTTATTCCAAATTGCAAGCAAGGGATGGTTTAGAGTATGAAGGTTCACCATCAGAAACTTCAAGTGTGGCTGATTTTCGTGGTAGAGATATGGGTGGAAAATCCTTTAACAATCCTCATTATTATGATGGAGACAGTGATGATGGAAAGAGGTTCCTTGACTCTCACTCAGGTCAAAGTGGAATTACAACCGCTCTTGCAATAGCAGAAGATTCCGATGACTGCAAGGAAGTTCAATGTATTGAAATGGGGGAGTCAGTCAGAGACGATGGCTTATCACCGCTTGCTGCTGACAATGGTGAATTTAGAGGAATGCCTTTTACTAGGTCAAACGATGGAAATATAATAGGTCATGAATTGATATCAACCCCTGTGAATGGGAACAGAGAAGCACACCAGATTCAAAATAATTCAACAAATGGTCAACCGGAGCAAAGACTCCATGATGTAAGAAGGATGGACATTAATTCTATGAGTAGTCCCTACCGCGACGATGCATGTTCAAAGGTTGCTGCTGACATGTCAAGCTCCAGAAGCTTGAAGCTAGCCAGAAGCTGGAGTTGTAGAGCCAATTTCACTACTGAGCTATCACCTGATAGAGGAGAGACCACCCCTCCTCATGGATTTGACAAAAGCTTTCCTGGAAGACCTGAAGGTTTTGAACGGAAACTCCCACAATTAGACTTTGATGGCAGCCTCCCGAGACTTGATTCTCAGTCTTCTATAGGAAGTGCTCGGAGCATCAAAACTTCTGCGGATGAAGACGTTACTCGCTTAGACGCCTTTGTTGCTGGGTTGAAGAAAATGAGAAACTCAGAGTGTGGGAAAGAACTTGCTGAGGGGCAGGTTCTGGAGGATGGACAAGAAATAGATTTCTTAAAGAACACAAATTATGTTGGAGGTGAGGCATTGGCAGATGGATTAGTCACATCGGATTGGAACGAAGAATTTCAGAGGCAGCAGAGGATGATAATTGAGCTTTGGCAAACTTGCAACGTTTCGATTGTCCACAGAACGTACTTTTTCTTGCTCTTCCAAGGCGATCCTGCCGATTCCATTTACATGGAAGTAGAGCTTAGGAGACTGACTTTTCTAAAGCAAACATTTTATTACGGCAATGCAGCTATGGATGATGGCCGGAAAGTCTCTTTTTCTTCAAGTACAAGGGATCTTCGTCGCGAGAGAGAAACATTGAGTAAGCTAATGCAGAAGCGATTCTCAGAAGATGAAAGAAAAAGATTGTTCCAGAAGTGGGGAATTGCGTTGAATTCGAAACGCCGAAGGCTGCAGCTGGTCAGCCAGTTGTGGAGCGATCCGAAGAACATGAACCATGTAACAGAGAGTGCAGCCATTGTTGCCAAGCTTGTGAAGTTTGCTGAGCAAGGACAGGCCCTCAAGGGGAACTTTGGTCTCAGCTTCATTACACCTCCACAAAAAAGTAGATCATTTAGCTGGATAAACAATAGGACTACTCTTATGTGA 3078 43.34 MSVSQHSFPSFYVRCFIPPVKLHRLLQFTLKLRLESFSLPLRFWIEVHCTRLEDDEKRSRVAEASDQTQRQKRRRGKGLNRGGGLLGWEKVWEMGAVAGEELMKLEKMQGINAREEKILVLVRLRPLNEKEIMMNEAADWECINDTSILYRNTLREGSTFPSAYTFDRVFRGDCSTKQVYEEGAREIAFSVVSGINSSIFAYGQTSSGKTYTMNGILEYSVADIFDYIRRHEERAFIVKFSAIEIYNEAVRDLLSTDTSPLRLLDDQERGTIVEKVTEETLRDWNHLRELISICEAQRRIGETSLNEKSSRSHQIIKLTIESSAREFLGKDNSTTLAASVSFIDLAGSERAAQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHINYRDSKLTRILQPCLGGNARTAIICTLSPARSHVEQTRNTLLFACCAKEVTTKAQVNVVMSDKALVKHLQKELARLESELRTPAPVSSSSEYAALLKKKDLQIEKMAKEIRELTKQRDLAQSRVEDLLRMVGHDDVSRKDVKTSYSKLQARDGLEYEGSPSETSSVADFRGRDMGGKSFNNPHYYDGDSDDGKRFLDSHSGQSGITTALAIAEDSDDCKEVQCIEMGESVRDDGLSPLAADNGEFRGMPFTRSNDGNIIGHELISTPVNGNREAHQIQNNSTNGQPEQRLHDVRRMDINSMSSPYRDDACSKVAADMSSSRSLKLARSWSCRANFTTELSPDRGETTPPHGFDKSFPGRPEGFERKLPQLDFDGSLPRLDSQSSIGSARSIKTSADEDVTRLDAFVAGLKKMRNSECGKELAEGQVLEDGQEIDFLKNTNYVGGEALADGLVTSDWNEEFQRQQRMIIELWQTCNVSIVHRTYFFLLFQGDPADSIYMEVELRRLTFLKQTFYYGNAAMDDGRKVSFSSSTRDLRRERETLSKLMQKRFSEDERKRLFQKWGIALNSKRRRLQLVSQLWSDPKNMNHVTESAAIVAKLVKFAEQGQALKGNFGLSFITPPQKSRSFSWINNRTTLM 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4739362 4748040 - ClCG02G004570.2 Cla02g00484 266610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00484 1025 MobiDBLite consensus disorder prediction 58 73 - -
Cla02g00484 1025 ProSitePatterns Kinesin motor domain signature. 338 349 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cla02g00484 1025 PANTHER CENTROMERE PROTEIN E 99 1024 - -
Cla02g00484 1025 Pfam Domain of unknown function (DUF3490) 848 1007 IPR021881 -
Cla02g00484 1025 Pfam Kinesin motor domain 123 439 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 MobiDBLite consensus disorder prediction 58 78 - -
Cla02g00484 1025 SMART kinesin_4 115 447 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 MobiDBLite consensus disorder prediction 727 781 - -
Cla02g00484 1025 PRINTS Kinesin heavy chain signature 303 320 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 PRINTS Kinesin heavy chain signature 194 215 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 PRINTS Kinesin heavy chain signature 389 410 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 PRINTS Kinesin heavy chain signature 339 357 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 471 IPR027417 -
Cla02g00484 1025 Coils Coil 485 519 - -
Cla02g00484 1025 Coils Coil 448 468 - -
Cla02g00484 1025 MobiDBLite consensus disorder prediction 765 781 - -
Cla02g00484 1025 PANTHER KINESIN-LIKE PROTEIN KIN-7F 99 1024 - -
Cla02g00484 1025 Gene3D Kinesin motor domain 109 470 IPR036961 -
Cla02g00484 1025 ProSiteProfiles Kinesin motor domain profile. 117 439 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cla02g00484 1025 MobiDBLite consensus disorder prediction 541 588 - -
Cla02g00484 1025 CDD KISc_CENP_E 117 439 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00484 K11498 CENPE; centromeric protein E - csv:101213783 1724.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00484 Cla-Chr2:4739362 Cla10g01541 Cla-Chr10:30740126 1.84E-77 dispersed
Cla02g00484 Cla-Chr2:4739362 Cla02g00491 Cla-Chr2:4841435 1.67E-70 proximal
Cla04g01075 Cla-Chr4:25897161 Cla02g00484 Cla-Chr2:4739362 0 transposed
Cla07g00791 Cla-Chr7:22103195 Cla02g00484 Cla-Chr2:4739362 2.80E-167 transposed
Cla11g00015 Cla-Chr11:191930 Cla02g00484 Cla-Chr2:4739362 5.92E-46 transposed
Cla02g00484 Cla-Chr2:4739362 Cla08g01443 Cla-Chr8:27296725 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g46 Blo02g00649 . . Bda08g00962 . Bpe12g00095 . . Cmo19g00704 . . . . . . Cpe04g00100 Cpe15g00563 Bhi05g01255 . . . . . . Cla02g00484 Cam02g0492 Cec02g0493 Cco02g0498 Clacu02g0496 Cmu02g0491 Cre02g0824 Cone12ag1189 Cone8ag1236 . Cone10ag1095 . Csa07g00039 . Cme01g01338 Blo04g00541 Blo13g00533 Bda15g01063 Bda14g00581 Bpe15g00840 Bpe05g00313 Bma03g00574 . . . . . Cma19g00692 . Car19g00536 . . . . . . . . . . . . . . . . Lsi11g01139 . Chy01g00742 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004297 2 1 3 1 3 1 2 1 1 1 1 1 3 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00484 Cla_Chr02 FPKM 9.962963 10.225527 0.132353 0.251948 5.618044 5.106003 4.793867 0.023517 0.131333 0.046303