Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla02g00486 ATGGCTGAAGATGCAAAATTACGAATGAAGCTGCAACGGGATGAGATTCGCGGGAGAACAGCCGCTGAAGAACGAAGATTTGTGAAGTGCAGACGAAGGAAAGAGCAAGTCGATTCTCTTACTCCTGAAGACATTGCTTGGGTTGACTCTTGTCTGATTAAAGAGATACCAGATATTTCAGATGGCAATTGGAACCACGTAAAGGATGCCTTGTTAGAAATCCTTGACCTGTATCCTCAAAGTTTTGAATCTTCTCTTGCTGTGAGCGATAATGTTCCGGGAGCTAGTAATGGCGACATCGACGTTGACATGCTTTCCCCTAACAATGTGAAGGAGCCTACATTTCCCTCGAGAGATAGTGACGATCCTATGAATGAAACAGGAATAGCTTCGGAAGATTCACAAAACCATGATCCTATGAATGAAACAGGAATAGCTTCAGAAGATCCACAAAACCACGACGACATCGATACTTCTCTGTCATTAACTCCTATCAAGAATCCATTTTTACCCACTTACAAAGAGGAGGTAGAAGGGAATGATGAGAATAATCAAGCTGGATTTGGGCATGAATTATCAGAAATTGGATCTGAGCCCCCAATCAATGATATTTTCCATGTCTGGGATTTGAACTTCCCTCCAGTTGAAGATGAACTCGTCGAGCAGCTGAACAAAGCCCTCACCGAAAATTCTGTTGAATCAGTCCCTTCAATGGACAGTAATCTTAATGTGTTGAAAGACTTAAAGGAAGATTTACTTGATGACTTGATCAATAGCATTTCTGACCTATCTTTGGAACAGACTAGATATTAG 813 41.45 MAEDAKLRMKLQRDEIRGRTAAEERRFVKCRRRKEQVDSLTPEDIAWVDSCLIKEIPDISDGNWNHVKDALLEILDLYPQSFESSLAVSDNVPGASNGDIDVDMLSPNNVKEPTFPSRDSDDPMNETGIASEDSQNHDPMNETGIASEDPQNHDDIDTSLSLTPIKNPFLPTYKEEVEGNDENNQAGFGHELSEIGSEPPINDIFHVWDLNFPPVEDELVEQLNKALTENSVESVPSMDSNLNVLKDLKEDLLDDLINSISDLSLEQTRY 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4774523 4780872 - ClCG02G004590.2 Cla02g00486 266612

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla02g00486 270 MobiDBLite consensus disorder prediction 97 167 - -
Cla02g00486 270 MobiDBLite consensus disorder prediction 127 147 - -
Cla02g00486 270 PANTHER OS02G0469000 PROTEIN 33 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla02g00486 - - - csv:101213547 378.637
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g41 Blo02g00648 . . Bda08g00961 . . Bma05g00420 . . . . . . . . Cpe04g00101 . Bhi05g01257 . . . . . . Cla02g00486 Cam02g0495 Cec02g0495 Cco02g0501 Clacu02g0499 Cmu02g0494 Cre02g0827 . . . . . Csa07g00036 . . . . . . . Bpe05g00315 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00745 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011943 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 1 3 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla02g00486 Cla_Chr02 FPKM 91.571999 99.928711 49.477688 47.482376 49.15836 47.376324 48.199757 41.590614 42.72427 42.75359