Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cla02g00488 | ATGGAAGCCGAAGAAGATGATTCTTCGTATCATGACCCAAAATCTTCGTTGTATGTTGATGATGGAAACTTAGATGTTAAGTGTGACACCAATCGGGAGCTTCAGAGCAATGAAGAACAGCATTGTGTGTCCAAGTCCTCAATTATGGAAACGGAGTTTTCACCTAATACCGGCGTGGAATCTTTACCACCCAGAGATGCAATTCTTGGGGATGAAATTCTTGCTGTGGATACTTATTCAGAGATGGAGAAGAAGGATTTGGTGGAGGAGACAGAGATAGCAGGGGAGAAGGATTTTCGCAACATTATTGAGGATATGGCGGAAGATTCAGTGAAGTTGGAGAATGAACCTGATATTGCGGAGACGGGGTTATTGGGACAAAGGGTTTTCGCTGATGTGAAAAAGAATACAGGGGTGTCGGAGGAGGAGGGGGCTTTGAGTGAATTTGCAGAAGGTGAGTTGTTACCTGAAATGGTTTTGGTTGGGGACGCTGAAAATCAGGTTGAGGGCAACGTTTTAATGGCGAATTTTTCAGAGGATACGGTCGTTGAAGGTTCAGCTACAGTTGGCTGTGCAGAGACAAACGAGAAGACGTGCCTGATTGATGTTTTGGCTGAGGAAACGCTTGCAGAAACGACTCTTTTTGTGCAGGATGTAGATGTTACTGATGCAACCAATTTGGTGAAGAAGACGGAGGTGGAAGAGAATGCCGATGACCCCAATGATTCGAAGGATACAGAGGTGCCAAAGCAAGAAAATTTAGGTGTGGAGGAAAGGCAATTAGGTGTCCCGGTGCAGTTGGCAGAGAACTCTGAGTTGAAAGTTAGTTCGGTAGATGGGGCTGTGGTGGAGGAGGGACAGTCGACAAATTTAGCAGACAGAACTGGTGAAACGTTGAAGATGAATGTCTCAAGCACCATTGATGAGGTGGGGGTGACACATTTTGCTGGGGAGATTAATGAGGCGGTAAATATAGGAAACACTGAAGACAAGACTATTGAGATGGGCGGAATGTGTGTGTATGACAAGGCTACTGATGTTGCGATGATGGAGAATTTGGCAGATGAGACCCCAGAGATCAAGGGAGTGGAGTTAGCAGACTACACTATTGAAGAGTTGAAGATTGAGAACGTGGAAGATAGGGAAGCGGGAGTGCAAGGATTGGGTGTGGCTGATGAGAGTCCCGTGGTTGGGAAGCTTGAGAATATGGCAGATGAGACTGCAGAGGCTGAGGAAGTGCAAGGGACTGACTACACTGCAGAAGATGTACAATCGGAGAATGTAGAAGAAGACAAGACTGTTCAAGGGGAGGACATAGCTATGGCAGACGAGAGTGCGGAGGCAGATGACGTGGTTTATTTGGTGGATGAAGGGATTGGATCAGAGGAGACGGATGCAAACATGGCATACTTGGTGGAGGAAGCGGAAGCAGCAGAGGAGATTGAGGAGATGGATGTTACAGAAGAGGTGGATGAGCCAAATAAAGGTAGCAGTGGGTCTAAAAGGAAGCGTGGAAAGAATTCTAAAGCTCCAACTAGAGTGCCTTCCAGGAAGAAGGTGGAAGAGGACGTTTGCTTTATTTGTTTTGATGGGGGTGATCTTGTACTCTGTGATCGCAGAGGTTGTCCCAAGGCATACCACCCGGCCTGTATTAATCGTGATGAGGCATTCTTCCGAGCCAAGGGTCGATGGAATTGTGGTTGGCATCTCTGTAGTAACTGTGAGAAGACTGCCCACTACATGTGTTACACATGTACTTTTTCCTTGTGCAAGGGCTGCATCAAAAATGCTGTTATTTTGTGTGTTAGAGGGAACAAAGGCTTCTGCGAGACATGCATGAGATTTGTTATGTTGATTGAAAAGAATGAGCAGGGGAATACAGAAAAGGTACGTTGTCTTCCCTTGCATTGCATTTCCTTATATCTTATTACGTTAAGAATGGTAAACCCATATCTAGATCAGCAAGTCATGAACTCCAGAGCCCTCTCAAGGTTCCATGAAACATGGCTGGAGGAAATTATAAGGACTTGTATTTTGCAAAAGTGTTGGGGAAGGGAGGGTGAAATCGAAGTCTTAGAAAGTCATGGAATGACAAAGGGCCAAATTGATTTTAATGACAAAAATAGCTGGGAATTTCTTTTCAAGGAGTACTGGACAGATCTGAAGGGAAGCCTTTCTCTAACTTTTGACGAACTTGTTCACGCAAAAAACCCATGGAAAGGATCTGAGACACTAACTAGCAGACCTGACTCACCTGGTGAGCTATGTGATGGTAATGTTGATGGAGGATCAGATTTGGATGTTTCTGAAAATGAAGAATCTGGTAGTTCTAAGAAAAGAAAAGCTAAGAAAAGGTCAAAAGCTCAAGCAAAGGAAATGAGTTCACCTAGTATGCCAGCTATACCTGATTCTCAAGGGCTATCCACGGATAACAATGTTGAGTGGGCATCTAAAGAGCTCTTGGAGTTTGTAATGCACATGAAGAACGGTGATGGAACTGTTTTATCTCAGTTTGATGTGCAGGCTCTCTTATTAGAATATATTAAAAGGAATAAGCTTCGTGATCCTCGACGGAAAAGTCAGATCATATGTGATTCAAGACTTGAAAATTTGTTTGGAAAGCCACGTGTGGGACATTTTGAAATGTTGAAGCTCCTAGAGTCACACTTCCTCATCAAAGAGGATGCCCAGACAAATAATCTCCAAGGGAGTGTTGCTGATACTGAATCAAGTCAGTTGGAGGCTGATGGCACTGATGGATTGGGAAAGAATAAGAAAGAGAAAAAACGCAGGGCACGGAAAAAAGGTGATGAGAGAGGATTGCAGTCTAACCTTGATGACTATGCGGCCATTGATATTCACAACATTAATTTAATTTACTTAAAGCGTAATTTGGTGGAATATCTGATCGAGGATGAGGAGAGTTTTCATGATAAGGTTGTTGGTTCTTTTGTGAGGATAAGAATATCAGGCAGTGCACAAAAACAAGATTTATATCGGCTGGTTCAAGTTGTTGGTACTAGCAAAGCATCCGAGCCTTATAAAATTGGTAAAAAGATGACCGATATCTTGCTAGAGATCTTGAATTTGAACAAGACAGAAGTGATTTCAATTGATATTATCTCAAATCAAGAGTTCACGGAGGAGGAGTGCAAGCGTCTCAGACAAAGCATTAAGTGTGGAATCCTTAACCGTTTGACAGTGGGTGACCTCCAGGAGAGAGCAATGTCGCTTCAAGATGCCAGAGTTAAGGATTGGATGGAAACTGAGATAGTTCGACTGAGTCATCTTCGTGATCGAGCAAGTGAGAAAGGCCGCCGAAAAGAATATCCTTTTTTTCTTTTGAAGACACCTGAGGAGCGGCAGCGCAGAATTGAGGAAATACCAGAAATACATGATGACCCAAATATGGATCCGAGTCATGAATCAGAAGATGAAGATGAAGCAGATGATAAGAGACGAGGAAACTACACCTTGTCAAGAAGTACAAGCTTTGGCAGGAGGATGAGGGAGCCAGTTTCTCCTGGAAAAGGAGGTTCAAATTTGAATGATTCCTGGAGCGGGACTAGAAACTTTTCTAACACGAATCGGGACTTGAGCAGGAACTTGTCTGGCAAAGGCTTCTCTAACCAAGGAGATGATGCCATTGGTTCTGGTGAAATAATAAACGAAAATTCATGGGGTCACGGAAGAGAGAGAGATGTTAAGAAAACAAACAAGTGGGACAAACAACAAGTTTCACCTAGTTCAGAAATCCCTGCTAGAAATGCCTCGTCTGGGGCCGCATCTGAGTTGTCTTCTGCTGTTAACTCAGTAAATCCAGCAGTATCTCCATCTGTGGGGACTACACAGAATGCTGCTACAGTTAATGAATCAGAGAAGATATGGCGTTATCAGGATCCTTCTGGGAAAGTGCAGGGACCATTTTCAATGGTGCAACTGCGTAAGTGGAGTAACACAGGTTATTTTCCTGCAGATTTGAGAGTATGGAGAACCTCAGACAAGCAAGAGGACTCCTTACTTTTGACCGATGTCTTAGCGGGAAAGATCCTGAAGGACACTTCACTGACAAGTAACAGTTTCCAAGCACAGTCGAATTCTTCTTCATTTGTTGGGAAGCCTCAGGGTGCCACTTTGCAGTCAGGTATGGATGGTCAGAATGCTGGCACTTCAAATTCACATACTAATCCAACTTCTTATGACCAATCTTCTGGAGGAAGATGGAAGTCTCAAAATGAAGTTAGCCCTACTGGTCGACCTGCCTCGGCTTCTATAGAAGTCCCTAGGTATTCAGGAGACAGATGGTCTTCTGACCATGGTAATAAGAATTTCACAAGTCTTCCTTCTCCTACTCCCAGCTCAGGAGGAACGAAGGAGCAGCCGTTTCAAGTGGCTGCGTCGTTCATGGAGGCGAAATCACTCTCAGGAGGTGGTAGTGGTTTGCACGGTTCTTCACTTATGCAAGGGTCTGAAAATGACTCGTTGCGCTCACATCCAGTCTGGAATTCATCAGAAAAGGGCATGGGTTTAGGTACTATAAATGCACTCCAAAATCATCATTCTCAGCCAGTAAGGCAATCACCTAGCATTGATGATGCTTTAGTCAATCCAGCTGCAGATATTAAAAGCATTAGCGCAAATCTTCATAGTTTAGTACAATCCATCAACAGTCGTAATCCTCCTATTGAAGCTCAAGGACACGGGTCCGTTCTGAAACGGGAAACAAATACTTCAGAGGCGTGGCAAAATGCACAATCTCTCAAAGCTGAATCAAACATTTCTTCTAGCATGCCACCAGCACAAACTCTTCACAGTCGTTGGGGGGAGATGTCGCCTGCACAAAATGCTGCTACATCGTTCAGTGCAGGAAGTTCAACATCAAGTTTTCCCTCGCCCGGTTTGTCCAGTTTTCCATCCTCCGACCCTTGGCGATCTACACCTCCTATTCCCAGTAACCTGCAACACATGCAGTCTTCAACTCCACCCAATCTACCTTGGGGAATGGGTGCTCCAGAAGGTCAAAGTACCGTTCCACGACCAGGTTCGGAGCCTCAGAACCAAGCCTGGGGACCAATGCCATCAGGAAATCCAAACATGGGTTGGGGTCCAACAGCACCGCCTCCAAATGCTACTGGTATGATGTGGGGAACTGCTGCTCAAAGTTCTGGTCCTGCAGGTACAAACCCAGGTTGGATTGCACCAGGTCAAGGGCCACCAGCAGGAAACAACATTCAAGGATGGCCAGCACACAGCCCAATGCCACCTCCGGTAAACGCAACTCCGGGATGGGTTGCCCCCAATGTTGCACCGATGCCACCTATGAATATGAATCCCAGTTGGCCTGTCCCATCCGCGAATCAGACCATGTGGGGTAATGAACATGGTAAAAATGGGGATAGATTCTCGAACCAAAAGGACAGTGGCTCTCATGGCGGAGATCCTGGGAATGGAGGTAAATCTTGGGGGATGCAACAATCTTTTGGTGGTGGTGGGAATTCTAGGTCTCCTTACAATAGAGTGCAAAAACTTTGCAAATACCATGAAAGTGGACATTGCAAGAAAGGAGGTACTTGTGATTACAGGCACAAGTAG | 5592 | 44.96 | MEAEEDDSSYHDPKSSLYVDDGNLDVKCDTNRELQSNEEQHCVSKSSIMETEFSPNTGVESLPPRDAILGDEILAVDTYSEMEKKDLVEETEIAGEKDFRNIIEDMAEDSVKLENEPDIAETGLLGQRVFADVKKNTGVSEEEGALSEFAEGELLPEMVLVGDAENQVEGNVLMANFSEDTVVEGSATVGCAETNEKTCLIDVLAEETLAETTLFVQDVDVTDATNLVKKTEVEENADDPNDSKDTEVPKQENLGVEERQLGVPVQLAENSELKVSSVDGAVVEEGQSTNLADRTGETLKMNVSSTIDEVGVTHFAGEINEAVNIGNTEDKTIEMGGMCVYDKATDVAMMENLADETPEIKGVELADYTIEELKIENVEDREAGVQGLGVADESPVVGKLENMADETAEAEEVQGTDYTAEDVQSENVEEDKTVQGEDIAMADESAEADDVVYLVDEGIGSEETDANMAYLVEEAEAAEEIEEMDVTEEVDEPNKGSSGSKRKRGKNSKAPTRVPSRKKVEEDVCFICFDGGDLVLCDRRGCPKAYHPACINRDEAFFRAKGRWNCGWHLCSNCEKTAHYMCYTCTFSLCKGCIKNAVILCVRGNKGFCETCMRFVMLIEKNEQGNTEKVRCLPLHCISLYLITLRMVNPYLDQQVMNSRALSRFHETWLEEIIRTCILQKCWGREGEIEVLESHGMTKGQIDFNDKNSWEFLFKEYWTDLKGSLSLTFDELVHAKNPWKGSETLTSRPDSPGELCDGNVDGGSDLDVSENEESGSSKKRKAKKRSKAQAKEMSSPSMPAIPDSQGLSTDNNVEWASKELLEFVMHMKNGDGTVLSQFDVQALLLEYIKRNKLRDPRRKSQIICDSRLENLFGKPRVGHFEMLKLLESHFLIKEDAQTNNLQGSVADTESSQLEADGTDGLGKNKKEKKRRARKKGDERGLQSNLDDYAAIDIHNINLIYLKRNLVEYLIEDEESFHDKVVGSFVRIRISGSAQKQDLYRLVQVVGTSKASEPYKIGKKMTDILLEILNLNKTEVISIDIISNQEFTEEECKRLRQSIKCGILNRLTVGDLQERAMSLQDARVKDWMETEIVRLSHLRDRASEKGRRKEYPFFLLKTPEERQRRIEEIPEIHDDPNMDPSHESEDEDEADDKRRGNYTLSRSTSFGRRMREPVSPGKGGSNLNDSWSGTRNFSNTNRDLSRNLSGKGFSNQGDDAIGSGEIINENSWGHGRERDVKKTNKWDKQQVSPSSEIPARNASSGAASELSSAVNSVNPAVSPSVGTTQNAATVNESEKIWRYQDPSGKVQGPFSMVQLRKWSNTGYFPADLRVWRTSDKQEDSLLLTDVLAGKILKDTSLTSNSFQAQSNSSSFVGKPQGATLQSGMDGQNAGTSNSHTNPTSYDQSSGGRWKSQNEVSPTGRPASASIEVPRYSGDRWSSDHGNKNFTSLPSPTPSSGGTKEQPFQVAASFMEAKSLSGGGSGLHGSSLMQGSENDSLRSHPVWNSSEKGMGLGTINALQNHHSQPVRQSPSIDDALVNPAADIKSISANLHSLVQSINSRNPPIEAQGHGSVLKRETNTSEAWQNAQSLKAESNISSSMPPAQTLHSRWGEMSPAQNAATSFSAGSSTSSFPSPGLSSFPSSDPWRSTPPIPSNLQHMQSSTPPNLPWGMGAPEGQSTVPRPGSEPQNQAWGPMPSGNPNMGWGPTAPPPNATGMMWGTAAQSSGPAGTNPGWIAPGQGPPAGNNIQGWPAHSPMPPPVNATPGWVAPNVAPMPPMNMNPSWPVPSANQTMWGNEHGKNGDRFSNQKDSGSHGGDPGNGGKSWGMQQSFGGGGNSRSPYNRVQKLCKYHESGHCKKGGTCDYRHK | 1863 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 4790731 | 4806726 | + | ClCG02G004620.2 | Cla02g00488 | 266614 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 36 | 62 | - | - | |
| Cla02g00488 | 1863 | ProSiteProfiles | Plus3 domain profile. | 950 | 1083 | IPR004343 | GO:0003677 | |
| Cla02g00488 | 1863 | CDD | Bbox1 | 570 | 595 | - | - | |
| Cla02g00488 | 1863 | SUPERFAMILY | Plus3-like | 951 | 1081 | IPR036128 | GO:0003677 | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 902 | 917 | - | - | |
| Cla02g00488 | 1863 | ProSiteProfiles | SWIB/MDM2 domain profile. | 809 | 892 | IPR003121 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1570 | 1664 | - | - | |
| Cla02g00488 | 1863 | ProSiteProfiles | Zinc finger PHD-type profile. | 522 | 588 | IPR019787 | - | |
| Cla02g00488 | 1863 | SMART | gyf_5 | 1294 | 1349 | IPR003169 | GO:0005515 | |
| Cla02g00488 | 1863 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 | 692 | 1862 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1478 | 1509 | - | - | |
| Cla02g00488 | 1863 | Pfam | Plus-3 domain | 955 | 1058 | IPR004343 | GO:0003677 | |
| Cla02g00488 | 1863 | SUPERFAMILY | GYF domain | 1284 | 1346 | IPR035445 | - | |
| Cla02g00488 | 1863 | SMART | rtf1 | 950 | 1060 | IPR004343 | GO:0003677 | |
| Cla02g00488 | 1863 | Gene3D | - | 951 | 1081 | IPR036128 | GO:0003677 | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1558 | 1712 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 40 | 58 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1786 | 1837 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 479 | 515 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 902 | 939 | - | - | |
| Cla02g00488 | 1863 | ProSiteProfiles | Zinc finger C3H1-type profile. | 1838 | 1863 | IPR000571 | GO:0046872 | |
| Cla02g00488 | 1863 | ProSitePatterns | Zinc finger PHD-type signature. | 525 | 585 | IPR019786 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1361 | 1459 | - | - | |
| Cla02g00488 | 1863 | SMART | PHD_3 | 524 | 570 | IPR001965 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1361 | 1419 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 740 | 809 | - | - | |
| Cla02g00488 | 1863 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 512 | 616 | IPR013083 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 230 | 255 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1678 | 1693 | - | - | |
| Cla02g00488 | 1863 | ProSiteProfiles | GYF domain profile. | 1293 | 1347 | IPR003169 | GO:0005515 | |
| Cla02g00488 | 1863 | PANTHER | UNCHARACTERIZED | 279 | 629 | - | - | |
| Cla02g00488 | 1863 | Gene3D | SWIB/MDM2 domain | 805 | 900 | IPR036885 | - | |
| Cla02g00488 | 1863 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 | 279 | 629 | - | - | |
| Cla02g00488 | 1863 | Pfam | SWIB/MDM2 domain | 817 | 890 | IPR003121 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1473 | 1509 | - | - | |
| Cla02g00488 | 1863 | Gene3D | - | 1295 | 1349 | IPR035445 | - | |
| Cla02g00488 | 1863 | CDD | SWIB-MDM2_like | 815 | 890 | - | - | |
| Cla02g00488 | 1863 | Pfam | GYF domain | 1296 | 1336 | IPR003169 | GO:0005515 | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1819 | 1837 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1242 | 1265 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 230 | 254 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1437 | 1459 | - | - | |
| Cla02g00488 | 1863 | PANTHER | UNCHARACTERIZED | 692 | 1862 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1178 | 1211 | - | - | |
| Cla02g00488 | 1863 | SMART | swib_2 | 810 | 895 | IPR019835 | - | |
| Cla02g00488 | 1863 | CDD | PHD5_NSD | 524 | 569 | - | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 408 | 433 | - | - | |
| Cla02g00488 | 1863 | SUPERFAMILY | SWIB/MDM2 domain | 811 | 891 | IPR036885 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1226 | 1241 | - | - | |
| Cla02g00488 | 1863 | CDD | GYF | 1293 | 1348 | IPR003169 | GO:0005515 | |
| Cla02g00488 | 1863 | SUPERFAMILY | FYVE/PHD zinc finger | 521 | 576 | IPR011011 | - | |
| Cla02g00488 | 1863 | MobiDBLite | consensus disorder prediction | 1128 | 1265 | - | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cla02g00488 | - | - | - | csv:101218325 | 2815.41 |
WGDs- Genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cla02g00488 | Cla02g01127 | CCT | |
| Cla02g00488 | Cla02g01127 | ECH | |
| Cla02g01127 | Cla02g00488 | ECH |
Dupl-types
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cla02g00488 | Cla-Chr2:4790731 | Cla07g00841 | Cla-Chr7:23357225 | 6.76E-49 | dispersed | |
| Cla10g01888 | Cla-Chr10:34788309 | Cla02g00488 | Cla-Chr2:4790731 | 9.84E-06 | dispersed |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi3g38 | . | . | . | . | . | . | . | . | Cmo19g00701 | . | . | . | . | . | Sed05g2290 | Cpe04g00103 | Cpe15g00561 | Bhi05g01262 | Tan02g0757 | Cmetu01g2730 | . | . | . | . | Cla02g00488 | Cam02g0497 | Cec02g0498 | Cco02g0503 | Clacu02g0501 | Cmu02g0496 | Cre02g0829 | Cone12ag1185 | Cone8ag1230 | . | . | . | Csa07g00034 | . | Cme01g01347 | Blo04g00538 | . | . | . | Bpe15g00843 | . | . | . | . | . | . | . | . | . | Car19g00533 | . | . | . | . | . | . | . | . | . | Cla02g01127 | Cam02g1202 | Cec02g1205 | Cco02g1255 | Clacu02g1191 | Cmu02g1153 | Cre02g1463 | . | . | Chy01g00747 | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0007589 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 36 |
Regulatory proteins
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 60600 | PF03126 | Plus-3 | 1.40E-24 | No_clan | Cla | TR |
Transcriptome
| Select | Gene | Chr | Type | da1 | da2 | da3 | da4 | da5 | da6 | da7 | da8 | da9 | da10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cla02g00488 | Cla_Chr02 | FPKM | 13.440239 | 14.801003 | 17.851833 | 15.908015 | 10.941738 | 10.162398 | 10.63727 | 20.717836 | 23.190886 | 21.451698 |